BacMap

Definition	Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession	NC_008752
Length	5,352,772

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The map label for this gene is yohF [C]

Identifier: 120611650

GI number: 120611650

Start: 3286060

End: 3286824

Strand: Reverse

Name: yohF [C]

Synonym: Aave_2987

Alternate gene names: 120611650

Gene position: 3286824-3286060 (Counterclockwise)

Preceding gene: 120611651

Following gene: 120611642

Centisome position: 61.4

GC content: 68.76

Gene sequence:

>765_bases
ATGAAGGTTTCGAACGGAACGCCGCGTATCGCGGTGGTGACGGGTGCCGGCTCGGGCATCGGCAAGGCGGCGGCGCTGGC
CCTGCTGGGCGCCGGCTGGTCGGTGGTGCTGGCCGGGCGCCGCGAAGCGCTGCTGCAGGCCGTGGTGGAGGAGGGGGGCC
CGGCCGATCGCGCGCTGGCCGTGCCCACGGACGTCGCGGATCCGCAGGCTGTGGAGCGGTTGTTCGCGCAGGCCGTCCAG
CGGTTCGGCCGCGTGGACCTGCTGTTCAACAACGCCGGGGTGGGCGCGCCTGCGGTGCTGCTGGAAGAGCTGCCGATCGA
CGAATGGAAGCGCGTGGTGGACATCAACCTGAACGGGATGTTCTATTGCCTGCGCGAGGCGTTCCGGGTGATGAAGTCGC
AGAGCCCGCAGGGGGGCCGGATCATCAACAACGGCTCGATTTCGGCCCATGCCCCGCGGCCGAACTCCATCGCCTACACG
GCGACCAAGCATGCCGTGATGGGGCTGACCAAGGCCGCCTCGCTGGATGGGCGCAAGTTCGACATCGCGGTCGGGCAGAT
CGATGTGGGCAATGCGGGCACGGAACTGGCGCAGCGCATGACGCAGGGCGTGCCCCAGGCCAATGGCCAGATCGCGGCCG
AGCCGCTGATGGACGTGGACATCGTCGCGCGGTCGGTGCTCTACATGGCGGAACTGCCGCTGGAGGCCAATGTGCTGTTC
CACACGGTGATGGCCACCAGGATGCCTTTCGTCGGCAGGGGATGA

Upstream 100 bases:

>100_bases
AGCGGGGCAAGTCGCGCCGCTGAGCCCTGGCGGGGCGCCGGGATGCCGCGAGCGTCCGGCCCCGCCCCGGGGTTGTGCAT
TCAGCAAAGGGACAGGATCG

Downstream 100 bases:

>100_bases
GGCCGCTCCGCCGGGGAGCGGTGTGCACGCACGGAGCCTGCCCGTAAAAGGCGGACGGGAGGCTCTCTGGGTCGGTGCTT
TCAGCCCGCGCAGGCGGAGG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKVSNGTPRIAVVTGAGSGIGKAAALALLGAGWSVVLAGRREALLQAVVEEGGPADRALAVPTDVADPQAVERLFAQAVQ
RFGRVDLLFNNAGVGAPAVLLEELPIDEWKRVVDINLNGMFYCLREAFRVMKSQSPQGGRIINNGSISAHAPRPNSIAYT
ATKHAVMGLTKAASLDGRKFDIAVGQIDVGNAGTELAQRMTQGVPQANGQIAAEPLMDVDIVARSVLYMAELPLEANVLF
HTVMATRMPFVGRG

Sequences:

>Translated_254_residues
MKVSNGTPRIAVVTGAGSGIGKAAALALLGAGWSVVLAGRREALLQAVVEEGGPADRALAVPTDVADPQAVERLFAQAVQ
RFGRVDLLFNNAGVGAPAVLLEELPIDEWKRVVDINLNGMFYCLREAFRVMKSQSPQGGRIINNGSISAHAPRPNSIAYT
ATKHAVMGLTKAASLDGRKFDIAVGQIDVGNAGTELAQRMTQGVPQANGQIAAEPLMDVDIVARSVLYMAELPLEANVLF
HTVMATRMPFVGRG
>Mature_254_residues
MKVSNGTPRIAVVTGAGSGIGKAAALALLGAGWSVVLAGRREALLQAVVEEGGPADRALAVPTDVADPQAVERLFAQAVQ
RFGRVDLLFNNAGVGAPAVLLEELPIDEWKRVVDINLNGMFYCLREAFRVMKSQSPQGGRIINNGSISAHAPRPNSIAYT
ATKHAVMGLTKAASLDGRKFDIAVGQIDVGNAGTELAQRMTQGVPQANGQIAAEPLMDVDIVARSVLYMAELPLEANVLF
HTVMATRMPFVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=233, Percent_Identity=29.6137339055794, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI31542939, Length=171, Percent_Identity=35.0877192982456, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI224922801, Length=179, Percent_Identity=34.0782122905028, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI4758504, Length=204, Percent_Identity=31.3725490196078, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI4504505, Length=245, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI4503817, Length=179, Percent_Identity=31.8435754189944, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI83715985, Length=170, Percent_Identity=32.3529411764706, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI15277342, Length=206, Percent_Identity=31.5533980582524, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7706318, Length=168, Percent_Identity=30.3571428571429, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI59889578, Length=186, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=30.1020408163265, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI19923817, Length=176, Percent_Identity=28.9772727272727, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI10190704, Length=238, Percent_Identity=30.672268907563, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1788459, Length=217, Percent_Identity=35.9447004608295, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082160, Length=205, Percent_Identity=31.219512195122, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787335, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789057, Length=241, Percent_Identity=28.6307053941909, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789208, Length=208, Percent_Identity=29.8076923076923, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI2367175, Length=174, Percent_Identity=30.4597701149425, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082100, Length=197, Percent_Identity=29.4416243654822, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787820, Length=245, Percent_Identity=25.7142857142857, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789378, Length=183, Percent_Identity=29.5081967213115, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787905, Length=210, Percent_Identity=29.5238095238095, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786812, Length=167, Percent_Identity=31.7365269461078, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790717, Length=197, Percent_Identity=26.3959390862944, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787526, Length=195, Percent_Identity=28.2051282051282, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=172, Percent_Identity=30.8139534883721, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=216, Percent_Identity=28.7037037037037, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=209, Percent_Identity=28.2296650717703, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=202, Percent_Identity=30.1980198019802, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=222, Percent_Identity=27.9279279279279, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=246, Percent_Identity=28.8617886178862, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=231, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=204, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=194, Percent_Identity=29.3814432989691, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=178, Percent_Identity=28.0898876404494, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=227, Percent_Identity=26.8722466960352, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=173, Percent_Identity=28.3236994219653, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=183, Percent_Identity=28.9617486338798, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=28.1938325991189, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=202, Percent_Identity=27.2277227722772, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=27.363184079602, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=205, Percent_Identity=25.3658536585366, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=210, Percent_Identity=24.7619047619048, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=150, Percent_Identity=27.3333333333333, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=204, Percent_Identity=25.4901960784314, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=221, Percent_Identity=32.1266968325792, Blast_Score=83, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=170, Percent_Identity=27.0588235294118, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI116007236, Length=253, Percent_Identity=32.0158102766798, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=35.6756756756757, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24639444, Length=180, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24648944, Length=231, Percent_Identity=29.8701298701299, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI281364494, Length=189, Percent_Identity=33.8624338624339, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24663911, Length=247, Percent_Identity=27.9352226720648, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007234, Length=252, Percent_Identity=31.3492063492063, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI18859837, Length=208, Percent_Identity=33.6538461538462, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24641388, Length=244, Percent_Identity=30.7377049180328, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24641232, Length=242, Percent_Identity=29.3388429752066, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648693, Length=234, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21355889, Length=234, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI17737361, Length=171, Percent_Identity=33.9181286549708, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI28571387, Length=240, Percent_Identity=28.75, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24580925, Length=184, Percent_Identity=29.8913043478261, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007232, Length=184, Percent_Identity=33.1521739130435, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=26.2886597938144, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355319, Length=173, Percent_Identity=29.4797687861272, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI23397609, Length=241, Percent_Identity=28.6307053941909, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21357041, Length=200, Percent_Identity=27, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571526, Length=202, Percent_Identity=26.2376237623762, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24584752, Length=176, Percent_Identity=30.1136363636364, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21358495, Length=221, Percent_Identity=24.8868778280543, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26751; Mature: 26751

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSNGTPRIAVVTGAGSGIGKAAALALLGAGWSVVLAGRREALLQAVVEEGGPADRALA
CCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEE
VPTDVADPQAVERLFAQAVQRFGRVDLLFNNAGVGAPAVLLEELPIDEWKRVVDINLNGM
CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCHHHHCEEEEECCCHH
FYCLREAFRVMKSQSPQGGRIINNGSISAHAPRPNSIAYTATKHAVMGLTKAASLDGRKF
HHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCEE
DIAVGQIDVGNAGTELAQRMTQGVPQANGQIAAEPLMDVDIVARSVLYMAELPLEANVLF
EEEEEEEECCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCHHHHH
HTVMATRMPFVGRG
HHHHHHHCCCCCCC
>Mature Secondary Structure
MKVSNGTPRIAVVTGAGSGIGKAAALALLGAGWSVVLAGRREALLQAVVEEGGPADRALA
CCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEE
VPTDVADPQAVERLFAQAVQRFGRVDLLFNNAGVGAPAVLLEELPIDEWKRVVDINLNGM
CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCHHHHCEEEEECCCHH
FYCLREAFRVMKSQSPQGGRIINNGSISAHAPRPNSIAYTATKHAVMGLTKAASLDGRKF
HHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCEE
DIAVGQIDVGNAGTELAQRMTQGVPQANGQIAAEPLMDVDIVARSVLYMAELPLEANVLF
EEEEEEEECCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCHHHHH
HTVMATRMPFVGRG
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]