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The map label for this gene is ydhO [H]

Identifier: 120611494

GI number: 120611494

Start: 3109511

End: 3110173

Strand: Direct

Name: ydhO [H]

Synonym: Aave_2830

Alternate gene names: 120611494

Gene position: 3109511-3110173 (Clockwise)

Preceding gene: 120611490

Following gene: 120611495

Centisome position: 58.09

GC content: 61.39

Gene sequence:

>663_bases
ATGGAAAAAGACCTGCAGCTACATTTTTTGCAATTAAAACAAGGCCAACGCGTGATACTCTCGCGCCCCATGTCACGTTG
GATTTGCCTTTTGTTACTGGTTTGCGCCACCGCCCATGCCGCTCCCCACAACAACGCAGCCACATCGGCCACTGATGACC
TGGATCGATTCCTGATCGACAGGCAGCAGGTGCTCAATCAGCTGCGTGACGTGCGGGCCAGTGTTCAGGACCGCACCGGC
GAACTGATCTCCACCGCAATGGGCTTCCTCGGCGTTCCTTACCGCCGAGGAGGCAACACGGCCGACAGCGGTTTCGATTG
CAGCGGATTCATCCGTGCGATCTACGGCCAGACCATCGGTCTCGCCCTCCCCCGCCGGGCCAACGAACAGGCCGCAGCCA
CCGAAACCATCGACAAGAAGGACCTCCAGCCCGGAGACCTCGTCTTCTTCAACACCATGCGCCGAGCCTACAGCCATGTG
GGCCTGTATCTGGGCGATGGCAAGTTCATCCATTCGCCGCGCAGCGGTGCGGAAGTCCGCGTGGAAGACATGAGCGCTTC
GTACTGGCAGCGCCGCTTCAACGGAGCCCGCCGCGTGCTCAGCGAAGACCAGTCCGCCAGCGGCGTGCAACCCTCCGCCT
CGGCGCAGAACCCGCTGAACTGA

Upstream 100 bases:

>100_bases
AAGTCAAGGTGCTTCCTCGTGTCGGACAAAGAGCCGCTCCACCGCCCAGGTGTTACTGGATAACGGACTGGAGAAACACG
CTCGACGATAGCCCCAGGCC

Downstream 100 bases:

>100_bases
TCGGCTTGCCTGCCCGGCCACGCCGGGGGCCTTGCATTCCGGCAGCCCGCTCCTGCGCTCCATGAACGGCGAACCCGGAC
TCCCTCCAGCCCCGTTCACT

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MEKDLQLHFLQLKQGQRVILSRPMSRWICLLLLVCATAHAAPHNNAATSATDDLDRFLIDRQQVLNQLRDVRASVQDRTG
ELISTAMGFLGVPYRRGGNTADSGFDCSGFIRAIYGQTIGLALPRRANEQAAATETIDKKDLQPGDLVFFNTMRRAYSHV
GLYLGDGKFIHSPRSGAEVRVEDMSASYWQRRFNGARRVLSEDQSASGVQPSASAQNPLN

Sequences:

>Translated_220_residues
MEKDLQLHFLQLKQGQRVILSRPMSRWICLLLLVCATAHAAPHNNAATSATDDLDRFLIDRQQVLNQLRDVRASVQDRTG
ELISTAMGFLGVPYRRGGNTADSGFDCSGFIRAIYGQTIGLALPRRANEQAAATETIDKKDLQPGDLVFFNTMRRAYSHV
GLYLGDGKFIHSPRSGAEVRVEDMSASYWQRRFNGARRVLSEDQSASGVQPSASAQNPLN
>Mature_220_residues
MEKDLQLHFLQLKQGQRVILSRPMSRWICLLLLVCATAHAAPHNNAATSATDDLDRFLIDRQQVLNQLRDVRASVQDRTG
ELISTAMGFLGVPYRRGGNTADSGFDCSGFIRAIYGQTIGLALPRRANEQAAATETIDKKDLQPGDLVFFNTMRRAYSHV
GLYLGDGKFIHSPRSGAEVRVEDMSASYWQRRFNGARRVLSEDQSASGVQPSASAQNPLN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=133, Percent_Identity=42.8571428571429, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786421, Length=117, Percent_Identity=43.5897435897436, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1788501, Length=200, Percent_Identity=32.5, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=42.7272727272727, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24366; Mature: 24366

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKDLQLHFLQLKQGQRVILSRPMSRWICLLLLVCATAHAAPHNNAATSATDDLDRFLID
CCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
RQQVLNQLRDVRASVQDRTGELISTAMGFLGVPYRRGGNTADSGFDCSGFIRAIYGQTIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LALPRRANEQAAATETIDKKDLQPGDLVFFNTMRRAYSHVGLYLGDGKFIHSPRSGAEVR
HCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEECCCEEEECCCCCCEEE
VEDMSASYWQRRFNGARRVLSEDQSASGVQPSASAQNPLN
EHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEKDLQLHFLQLKQGQRVILSRPMSRWICLLLLVCATAHAAPHNNAATSATDDLDRFLID
CCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
RQQVLNQLRDVRASVQDRTGELISTAMGFLGVPYRRGGNTADSGFDCSGFIRAIYGQTIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LALPRRANEQAAATETIDKKDLQPGDLVFFNTMRRAYSHVGLYLGDGKFIHSPRSGAEVR
HCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEECCCEEEECCCCCCEEE
VEDMSASYWQRRFNGARRVLSEDQSASGVQPSASAQNPLN
EHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]