| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is yedA [C]
Identifier: 120611489
GI number: 120611489
Start: 3100557
End: 3101462
Strand: Direct
Name: yedA [C]
Synonym: Aave_2825
Alternate gene names: 120611489
Gene position: 3100557-3101462 (Clockwise)
Preceding gene: 120611488
Following gene: 120611490
Centisome position: 57.92
GC content: 71.63
Gene sequence:
>906_bases GTGAACGCGGCGGCCGGCGTGCTGCCTGCCCGCCACTGGATCGGTGAATTCCTGCTGCTTTCCGCCCTCTGGGGGGCGTC GTTCCTCTTCATGCGCCTGGGCGCGTCCGAATTCGGGCCCCTGCCCACGGCGGGGCTGCGGGTGGCACTGGCCACCCTGT TCCTCTGGCCCATCCTGCTGCGCCAGGGCCAGTGGCCCGCGCTGCGCCGCCACTGGAAGCCCATCCTGCTGGGCGGCGTC ATCAATTCCGCCATTCCTTTCGCGCTCTATGCCTGGGCGGTGCTGCACATCACCACGGGGCTGTCTTCCATCCTGAATGC CACCGTACCACTGTTCGGCGCCCTGGTGGCCTGGGTGTGGCTGGGCGACCGCATCGGCCGGCTGCGGTGGGCCGGACTGG CGATCGGCTTCGCGGGCGTGGCGCTGCTGGCCTGGCGCGCGCCCGCGGCGGTCGGTTTCAAATCGGACCACGCCATCTGG GCAGTCGGCGCCTGCCTGCTGGCCACCACCTGCTATGCGGTAGGCGCCAGCTACGCCCGGCGGCACCTGGTCGGGCTGCC GCCGCTGGCCACCGCCACGGGCAGCCAGTTGGGCGCCACCCTCGCGCTCGCCCTGCCCGCGCTGTGGTCCTGGCCGGCGC GGGCTCCGGGCCCCGGAGCCTGGGCCGCGGTGATCGCCATCGCCGTACTGTGCACGGGCATCGCCTACATCCTGTATTTC CGGTTGATCGCACATGCCGGACCGAGCCGGGCGCTCGCCGTGACCTTCCTCGCCCCCGTGTTCGCGGTGGCCTACGGCGC CCTGTTCCTGGGCGAATCGGTCACGCCGTGGATGGCCGGCTGCGGCGTGGTCATCGTATGCGGCACCATGCTGTCCACGG GATTGGTGCGCCTGCGCGAACGTTGA
Upstream 100 bases:
>100_bases TGGAAGGGGCTCTTGCGGACCGCCTGCGCACCTTGCCCCTCTGGCCGCAGGGCGACGCCACGGCCCGCGGCACCGGCGCC CCGCGCACCGGGGCGGCGGC
Downstream 100 bases:
>100_bases GCAGGACGGCGCGGCACGCTGCGCTGCATTAGCACGACAAATTGTGAGGCCGTGTCAGCAATTGACGCCATGATTGGTGC GAGAGCGCCTAAACTCGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter Membrane Spanning Protein; Transmembrane Drug/Metabolite Transporter Family Protein; Permease Protein; DMT Family Permease; Transporter Drug/Metabolite Exporter Family; Transmembrane Protein; Integral Membrane; Permease; Transmembrane Component Of ABC Transporter; Transporter DME Family DMT Superfamily; Drug/Metabolite Exporter Family Protein; Transmembrane Drug/Metabolite Transporter; ABC Transporter; EamA Family Protein; Permease Of Drug/Metabolite Transporter Superfamily; Drug/Metabolite Transporter Superfamily Permease; DMT Transporter
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MNAAAGVLPARHWIGEFLLLSALWGASFLFMRLGASEFGPLPTAGLRVALATLFLWPILLRQGQWPALRRHWKPILLGGV INSAIPFALYAWAVLHITTGLSSILNATVPLFGALVAWVWLGDRIGRLRWAGLAIGFAGVALLAWRAPAAVGFKSDHAIW AVGACLLATTCYAVGASYARRHLVGLPPLATATGSQLGATLALALPALWSWPARAPGPGAWAAVIAIAVLCTGIAYILYF RLIAHAGPSRALAVTFLAPVFAVAYGALFLGESVTPWMAGCGVVIVCGTMLSTGLVRLRER
Sequences:
>Translated_301_residues MNAAAGVLPARHWIGEFLLLSALWGASFLFMRLGASEFGPLPTAGLRVALATLFLWPILLRQGQWPALRRHWKPILLGGV INSAIPFALYAWAVLHITTGLSSILNATVPLFGALVAWVWLGDRIGRLRWAGLAIGFAGVALLAWRAPAAVGFKSDHAIW AVGACLLATTCYAVGASYARRHLVGLPPLATATGSQLGATLALALPALWSWPARAPGPGAWAAVIAIAVLCTGIAYILYF RLIAHAGPSRALAVTFLAPVFAVAYGALFLGESVTPWMAGCGVVIVCGTMLSTGLVRLRER >Mature_301_residues MNAAAGVLPARHWIGEFLLLSALWGASFLFMRLGASEFGPLPTAGLRVALATLFLWPILLRQGQWPALRRHWKPILLGGV INSAIPFALYAWAVLHITTGLSSILNATVPLFGALVAWVWLGDRIGRLRWAGLAIGFAGVALLAWRAPAAVGFKSDHAIW AVGACLLATTCYAVGASYARRHLVGLPPLATATGSQLGATLALALPALWSWPARAPGPGAWAAVIAIAVLCTGIAYILYF RLIAHAGPSRALAVTFLAPVFAVAYGALFLGESVTPWMAGCGVVIVCGTMLSTGLVRLRER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31734; Mature: 31734
Theoretical pI: Translated: 11.24; Mature: 11.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAAAGVLPARHWIGEFLLLSALWGASFLFMRLGASEFGPLPTAGLRVALATLFLWPILL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHH RQGQWPALRRHWKPILLGGVINSAIPFALYAWAVLHITTGLSSILNATVPLFGALVAWVW HCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGDRIGRLRWAGLAIGFAGVALLAWRAPAAVGFKSDHAIWAVGACLLATTCYAVGASYAR HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RHLVGLPPLATATGSQLGATLALALPALWSWPARAPGPGAWAAVIAIAVLCTGIAYILYF HHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RLIAHAGPSRALAVTFLAPVFAVAYGALFLGESVTPWMAGCGVVIVCGTMLSTGLVRLRE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHC R C >Mature Secondary Structure MNAAAGVLPARHWIGEFLLLSALWGASFLFMRLGASEFGPLPTAGLRVALATLFLWPILL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHH RQGQWPALRRHWKPILLGGVINSAIPFALYAWAVLHITTGLSSILNATVPLFGALVAWVW HCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGDRIGRLRWAGLAIGFAGVALLAWRAPAAVGFKSDHAIWAVGACLLATTCYAVGASYAR HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RHLVGLPPLATATGSQLGATLALALPALWSWPARAPGPGAWAAVIAIAVLCTGIAYILYF HHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RLIAHAGPSRALAVTFLAPVFAVAYGALFLGESVTPWMAGCGVVIVCGTMLSTGLVRLRE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA