| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120611432
Identifier: 120611432
GI number: 120611432
Start: 3041429
End: 3041923
Strand: Reverse
Name: 120611432
Synonym: Aave_2768
Alternate gene names: NA
Gene position: 3041923-3041429 (Counterclockwise)
Preceding gene: 120611434
Following gene: 120611431
Centisome position: 56.83
GC content: 65.05
Gene sequence:
>495_bases ATGACACGGCACCTGACCCGTTGCCTCGCGTCCGGCGTGATGCTGCTGCTGCAGTCCGCGGTGACGCACTCGTCTCCCGC TCTCGTGGACGGCAACACGCGCGTGATGCTGGGCCGCTACTCCACCGCCGAGGCAGTACCTCAGCAGAGCTTGAGTGAGC CGCTGGAGCTCGTGGCGCAGATCACCTTTCCTCGCGAGCAGGTGACGACGATCGGTGACGCGATCGAGTACACGTTGCTG CGGACCGGCTATGCACTGCCGGACAGGAAGGGTCTTCCAGCCGATGCACAGCAATTTCTCACTCTGCCGTTGCCGGAGGC TCAACGTACGCTCGGACCCTTTAGCGTGCAGGACATCTTGAACGTCCTGGTCGGCAAAGCCTGGCGGTGGCAGACCGACC CGGTGACTCGCCGCGTCTGGTTCACGTTGGTGAACGGACCGACGCCGCGACAGCTCCAGCCGATCGTGTCGCCCGCGCCC GTCGCAAAGCCGTAG
Upstream 100 bases:
>100_bases AACGCAATGCGAATCCCCCGGGCCGCCGCTTCTCCCTCCCTCTCCTCCCCATGTATTGGCGGCCCGGGCTTCTTTTATTC CCAAGGAATTGCCCTGACCC
Downstream 100 bases:
>100_bases GGAGGCAGCGATGACCGCAACCGACGACTTCGACCGGATGCAGGAGCAGCGCCGACTGGATGACGAGCGGCGCCGCCAAG AAGAGGCGCTGCCCGTGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; PilL Protein; Type IV B Pilus Protein; Pilus Biogenesis Protein; Type IV Pilus Operon Lipoprotein; Pilus Biogenesis Protein PilL
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MTRHLTRCLASGVMLLLQSAVTHSSPALVDGNTRVMLGRYSTAEAVPQQSLSEPLELVAQITFPREQVTTIGDAIEYTLL RTGYALPDRKGLPADAQQFLTLPLPEAQRTLGPFSVQDILNVLVGKAWRWQTDPVTRRVWFTLVNGPTPRQLQPIVSPAP VAKP
Sequences:
>Translated_164_residues MTRHLTRCLASGVMLLLQSAVTHSSPALVDGNTRVMLGRYSTAEAVPQQSLSEPLELVAQITFPREQVTTIGDAIEYTLL RTGYALPDRKGLPADAQQFLTLPLPEAQRTLGPFSVQDILNVLVGKAWRWQTDPVTRRVWFTLVNGPTPRQLQPIVSPAP VAKP >Mature_163_residues TRHLTRCLASGVMLLLQSAVTHSSPALVDGNTRVMLGRYSTAEAVPQQSLSEPLELVAQITFPREQVTTIGDAIEYTLLR TGYALPDRKGLPADAQQFLTLPLPEAQRTLGPFSVQDILNVLVGKAWRWQTDPVTRRVWFTLVNGPTPRQLQPIVSPAPV AKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18036; Mature: 17905
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRHLTRCLASGVMLLLQSAVTHSSPALVDGNTRVMLGRYSTAEAVPQQSLSEPLELVAQ CCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCHHHCCHHHHHHHHHHHHH ITFPREQVTTIGDAIEYTLLRTGYALPDRKGLPADAQQFLTLPLPEAQRTLGPFSVQDIL HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCHHHHHCCCCCHHHHH NVLVGKAWRWQTDPVTRRVWFTLVNGPTPRQLQPIVSPAPVAKP HHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TRHLTRCLASGVMLLLQSAVTHSSPALVDGNTRVMLGRYSTAEAVPQQSLSEPLELVAQ CHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCHHHCCHHHHHHHHHHHHH ITFPREQVTTIGDAIEYTLLRTGYALPDRKGLPADAQQFLTLPLPEAQRTLGPFSVQDIL HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCHHHHHCCCCCHHHHH NVLVGKAWRWQTDPVTRRVWFTLVNGPTPRQLQPIVSPAPVAKP HHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA