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The map label for this gene is ypdA [H]

Identifier: 120610628

GI number: 120610628

Start: 2110134

End: 2111198

Strand: Reverse

Name: ypdA [H]

Synonym: Aave_1948

Alternate gene names: 120610628

Gene position: 2111198-2110134 (Counterclockwise)

Preceding gene: 120610632

Following gene: 120610627

Centisome position: 39.44

GC content: 73.71

Gene sequence:

>1065_bases
ATGCAAGAGACCCAAATTTTATCGACCCGGCCCCAGCCCCTGGCAGAGCCCCCTCCGGAGGGGCTCGGCGGGCGGGCGCT
CGTCTTCGATGCATGCCACGTCGGCGTGGTGCTGCGCGCCGTGCTGTTCGTGGAGATCGTGCTCGGCGTGGGCGCGATGT
ACGGCGCCGACGGCCCGGCCGCGTGGCTGGCCCGGCTGTCGCTGCTGACCGGCGGCGCGCTGCCGGCGACCCTGGCCTGG
CTGGTCACGGCCTGCAGCCTCAAGACCCTGCTGCAGCGCCTGCCCGTGGCGCTGCAATCCGCGGCCGGCGTGGGCCTGGG
GACGCTGGCCGGCCTCTACGCCTGCGGCATGCTGGTGCTGGTCGGCGTGCCCATGGAGGCACCCTGGCTGGCCAGCGCCG
CGAGCGGGGCGCTGCTGTCGGCACTGCTCGTGGCGGCGCTGGTGCTGCGCGCCCGGGCACGCACGCCGGCCGCCACCACC
GCGCGGCTCGGCGAACTGCAGGCGCGCATCCGGCCGCACTTCCTCTTCAATACCCTCAACAGCGCCATCGCGCTGGTGCG
CGACGAGCCGGCCAGGGCCGAGGCCCTGCTGGAAGACCTGAGCGACCTGTTCCGCCATGCCCTGGTGGAACAGGGCGACT
CCGCGACGCTGGGCGAGGAGATCGTGCTGGCGCGGCGCTACCTCGCCATCGAGGAAGTGCGCTTCGGGGAGCGCCTGCGC
GTGCAATGGCTGCTCGACCCGCGCACCGACGGCGCCCGGCTGCCGCCCCTGCTGCTGCAGCCGCTCGTGGAAAACGCCGT
CAAGCACGGCGTGGAGCCCTCCGCCCATGGGGGCAAGCTGCGCGTGACGACCGAGCTGCGCGGCAGCCGCGCCGTGGTCA
CCATCACCAACACCGTGCCGCCCGGCGGGGCCCGCGCGGGAGAGGGCGCACCCCGCGGCCACGGCATCGCCCTGGCCAAC
GTGCGCGACCGGCTGCGCCTGCTGCACGATGTGCAGTGCGATTTCTCGGCGGGCATGCACAATGGCCTCTACCGGGTACG
CATCTCCCTGCCGGCGCATCCCTGA

Upstream 100 bases:

>100_bases
TGGTGGCGAGCTGGTCTTGGGAAGGTTGCGCGGTGGGGCTGGAGGACATGGAGGGCAATAATCCGGAGGTTTCGGCCACC
CGGAACGCCCGGATGCCGCG

Downstream 100 bases:

>100_bases
CGCCCGCCACCGCGACCGACACCACCTCCTTGCGGCTCCCATGCACATCCTCATCGTGGACGACGAAGCCCTGGCCCGCA
GCCGCCTGCGCACGCTGCTG

Product: histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MQETQILSTRPQPLAEPPPEGLGGRALVFDACHVGVVLRAVLFVEIVLGVGAMYGADGPAAWLARLSLLTGGALPATLAW
LVTACSLKTLLQRLPVALQSAAGVGLGTLAGLYACGMLVLVGVPMEAPWLASAASGALLSALLVAALVLRARARTPAATT
ARLGELQARIRPHFLFNTLNSAIALVRDEPARAEALLEDLSDLFRHALVEQGDSATLGEEIVLARRYLAIEEVRFGERLR
VQWLLDPRTDGARLPPLLLQPLVENAVKHGVEPSAHGGKLRVTTELRGSRAVVTITNTVPPGGARAGEGAPRGHGIALAN
VRDRLRLLHDVQCDFSAGMHNGLYRVRISLPAHP

Sequences:

>Translated_354_residues
MQETQILSTRPQPLAEPPPEGLGGRALVFDACHVGVVLRAVLFVEIVLGVGAMYGADGPAAWLARLSLLTGGALPATLAW
LVTACSLKTLLQRLPVALQSAAGVGLGTLAGLYACGMLVLVGVPMEAPWLASAASGALLSALLVAALVLRARARTPAATT
ARLGELQARIRPHFLFNTLNSAIALVRDEPARAEALLEDLSDLFRHALVEQGDSATLGEEIVLARRYLAIEEVRFGERLR
VQWLLDPRTDGARLPPLLLQPLVENAVKHGVEPSAHGGKLRVTTELRGSRAVVTITNTVPPGGARAGEGAPRGHGIALAN
VRDRLRLLHDVQCDFSAGMHNGLYRVRISLPAHP
>Mature_354_residues
MQETQILSTRPQPLAEPPPEGLGGRALVFDACHVGVVLRAVLFVEIVLGVGAMYGADGPAAWLARLSLLTGGALPATLAW
LVTACSLKTLLQRLPVALQSAAGVGLGTLAGLYACGMLVLVGVPMEAPWLASAASGALLSALLVAALVLRARARTPAATT
ARLGELQARIRPHFLFNTLNSAIALVRDEPARAEALLEDLSDLFRHALVEQGDSATLGEEIVLARRYLAIEEVRFGERLR
VQWLLDPRTDGARLPPLLLQPLVENAVKHGVEPSAHGGKLRVTTELRGSRAVVTITNTVPPGGARAGEGAPRGHGIALAN
VRDRLRLLHDVQCDFSAGMHNGLYRVRISLPAHP

Specific function: Unknown

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=187, Percent_Identity=33.1550802139037, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788446, Length=193, Percent_Identity=32.6424870466321, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 37450; Mature: 37450

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQETQILSTRPQPLAEPPPEGLGGRALVFDACHVGVVLRAVLFVEIVLGVGAMYGADGPA
CCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AWLARLSLLTGGALPATLAWLVTACSLKTLLQRLPVALQSAAGVGLGTLAGLYACGMLVL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VGVPMEAPWLASAASGALLSALLVAALVLRARARTPAATTARLGELQARIRPHFLFNTLN
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SAIALVRDEPARAEALLEDLSDLFRHALVEQGDSATLGEEIVLARRYLAIEEVRFGERLR
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
VQWLLDPRTDGARLPPLLLQPLVENAVKHGVEPSAHGGKLRVTTELRGSRAVVTITNTVP
EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEECCCC
PGGARAGEGAPRGHGIALANVRDRLRLLHDVQCDFSAGMHNGLYRVRISLPAHP
CCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MQETQILSTRPQPLAEPPPEGLGGRALVFDACHVGVVLRAVLFVEIVLGVGAMYGADGPA
CCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AWLARLSLLTGGALPATLAWLVTACSLKTLLQRLPVALQSAAGVGLGTLAGLYACGMLVL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VGVPMEAPWLASAASGALLSALLVAALVLRARARTPAATTARLGELQARIRPHFLFNTLN
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SAIALVRDEPARAEALLEDLSDLFRHALVEQGDSATLGEEIVLARRYLAIEEVRFGERLR
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
VQWLLDPRTDGARLPPLLLQPLVENAVKHGVEPSAHGGKLRVTTELRGSRAVVTITNTVP
EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEECCCC
PGGARAGEGAPRGHGIALANVRDRLRLLHDVQCDFSAGMHNGLYRVRISLPAHP
CCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]