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The map label for this gene is ybaK [H]

Identifier: 120610530

GI number: 120610530

Start: 2006816

End: 2007319

Strand: Direct

Name: ybaK [H]

Synonym: Aave_1850

Alternate gene names: 120610530

Gene position: 2006816-2007319 (Clockwise)

Preceding gene: 120610529

Following gene: 120610531

Centisome position: 37.49

GC content: 70.63

Gene sequence:

>504_bases
GTGAGCCGCAAGGACCGGGCCGCCGCCCACGTCGGCGAGACGCCGGCCACGCAGTTCCTGCGCCGCCACGGCGTGGCGTT
CACCGAGCACCCGTACGAGTACGTGGAGCACGGCGGCACGGCCGAGTCGGCGCGGCAACTGGGGCTGGACGAGCATATGG
TCGTCAAGACGCTGGTGATGCAGGACCAGGACGCCCGCCCGCTGATCGTGCTCATGCACGGCGACCGCAAGGTCTCCACC
AAGAACCTGGCGCGCCAGATCGGCGCCAAGTCGGTGGAGCCATGCAAGCCGGAGGTGGCGAACCGCCACAGCGGCTACCT
CGTCGGCGGTACCTCGCCCTTCGGCACGCGGCGCGAGATGCCGGTGTACGTGGAGGAGACCATCCTGGAGCTCCCGCGCA
TCGCCATCAATGGCGGGCGCCGCGGCTTCCTGGTGCAGCTCGATCCCGCGGTCTGCGTGCAGACCCTGGGCGCCCGGACC
GTGCAGTGCGCGCTGGCAGAATAG

Upstream 100 bases:

>100_bases
CCCAGCTGGAGGAGGACATCGCCGCCTGGAACACGCAGCTTTCGCCCGAACTGCTGGCGGCCATCGACGCGATCCGCTGG
GACATCCGGGACCCCGCGCT

Downstream 100 bases:

>100_bases
CCGGCCCGTGCGCGGCGGCCGACGCCGCGCTCCGCTCCACCACAAGGACACGATCTTGACCGCCGCCTATTCCCTCCTGG
CCACGCTCGCCGCCTACCTG

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSRKDRAAAHVGETPATQFLRRHGVAFTEHPYEYVEHGGTAESARQLGLDEHMVVKTLVMQDQDARPLIVLMHGDRKVST
KNLARQIGAKSVEPCKPEVANRHSGYLVGGTSPFGTRREMPVYVEETILELPRIAINGGRRGFLVQLDPAVCVQTLGART
VQCALAE

Sequences:

>Translated_167_residues
MSRKDRAAAHVGETPATQFLRRHGVAFTEHPYEYVEHGGTAESARQLGLDEHMVVKTLVMQDQDARPLIVLMHGDRKVST
KNLARQIGAKSVEPCKPEVANRHSGYLVGGTSPFGTRREMPVYVEETILELPRIAINGGRRGFLVQLDPAVCVQTLGART
VQCALAE
>Mature_166_residues
SRKDRAAAHVGETPATQFLRRHGVAFTEHPYEYVEHGGTAESARQLGLDEHMVVKTLVMQDQDARPLIVLMHGDRKVSTK
NLARQIGAKSVEPCKPEVANRHSGYLVGGTSPFGTRREMPVYVEETILELPRIAINGGRRGFLVQLDPAVCVQTLGARTV
QCALAE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=165, Percent_Identity=31.5151515151515, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 18370; Mature: 18239

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKDRAAAHVGETPATQFLRRHGVAFTEHPYEYVEHGGTAESARQLGLDEHMVVKTLVM
CCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHCCCCHHHHHHHHHH
QDQDARPLIVLMHGDRKVSTKNLARQIGAKSVEPCKPEVANRHSGYLVGGTSPFGTRREM
CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
PVYVEETILELPRIAINGGRRGFLVQLDPAVCVQTLGARTVQCALAE
CHHHHHHHHHCCCEEECCCCCEEEEEECHHHHHHHHCCCEEEEEECC
>Mature Secondary Structure 
SRKDRAAAHVGETPATQFLRRHGVAFTEHPYEYVEHGGTAESARQLGLDEHMVVKTLVM
CCCHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHCCCCHHHHHHHHHH
QDQDARPLIVLMHGDRKVSTKNLARQIGAKSVEPCKPEVANRHSGYLVGGTSPFGTRREM
CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
PVYVEETILELPRIAINGGRRGFLVQLDPAVCVQTLGARTVQCALAE
CHHHHHHHHHCCCEEECCCCCEEEEEECHHHHHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]