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The map label for this gene is ymfN [H]

Identifier: 120610451

GI number: 120610451

Start: 1923127

End: 1924638

Strand: Direct

Name: ymfN [H]

Synonym: Aave_1768

Alternate gene names: 120610451

Gene position: 1923127-1924638 (Clockwise)

Preceding gene: 120610450

Following gene: 120610452

Centisome position: 35.93

GC content: 66.14

Gene sequence:

>1512_bases
TTGACGCGAAGCCGAAGTAGGGGGCTGCGGAACATCGCCTGGATCGAGTCGATGTGCCGTATCCCCGACGGCAAGCATGT
TGGGCAGCCGGTGCGGCTGACCAAGCCTCAGAAGGAGTGGATCCGGAAGATCTATGACACGCCGACGCGCACGTTCATCC
TGAGCATGGCGCGCAAGAACGCGAAGACGGCCACGAGCGCATTCCTGCTGCTCCTGCACCTGTGCGGGCCCGAGGCCAAG
CCGAACAGCCAGCTGTACAGCGCAGCACAGTCCCGCGACCAGGCGGCTATCCTCTACGGATACGCCTCCAAGGTCGTGCG
CATGTCGCCGGAACTGAGCGAGTACGTCATCCCGAAGGAGTCGGCGAAGACCCTGGTCTGCCCCGAGCTTGGCACCACCT
ACCGCGCGCTGTCTGCGGACGCCTCGACGGCCTACGGGCTCTCGCCGGTGTTCTCGGTGCACGACGAACTGGGGCAGGTG
GTCGGGCCGCGGTCGGAACTGTACGAGGCGATCGAAACGGCATCGGCCGCGCATGAGCGGCCGCTGTCGATCATCATCAG
TACGCAGGCGCGCACGGATGCCGACCTGCTGAGCCTGCTGATCGACGACGCGCTGACGGGTGCGGACCCGCGGGTGAAAG
TGGCGCTGCACACCGCGCCCATGGACATGGACCCGTTCAGCGACAAGGCGATCCGGGCGGCGAACCCGCACTTCGACGTG
TTCATGAACCAGGAGGAGGTCCGCAAGCAGGCTACGGACGCCAAGCGGCTGCCGAGCATGGAGGCGGGCTACCGCAACCT
GATCCTCAACCAGCGGGTGGAGGCGAAGACGCCCTTCATCACGCGGGCGGTGTGGCAGGAAAACGGGGCCGAGCCGGACG
ACCAGCCAGGCCTGAAGGTGTACGGGGGGCTCGACCTGTCGGCCGTGAGCGACCTGACGGCGTTGGTGCTGGCCTCCGAT
GTCGGCGACGTGATCCCGAGCTTCTGGCTGCCGGGCGACGGGCTCGCGGAGAAGTCCCGAGCGGACCGCGTGCCCTACGA
CGTTTGGGCATCCAAAGGACTGCTCAAGACGACCCCGGGCCGGTCAATCGAGTACGAGTACGTGGCCGCCGAGCTGCGCG
CCGTTTTCGATCGGTACGACGTCCAGGCGATCGCTTTCGACCGCTGGGGCATGCGGCACCTACGGCCATGGCTGGTGAAG
GCCGGGTTCACCGAGAAGGAGCTGGCGAAGTTCGTGGACTTCGGCCAGGGATTTCAGTCGATGTCGCCGGCCATCCGGAC
GCTCGAGGAAAAGCTGCTGGCCAAGAAGCTGAAGCACGCCAACCACCCCGTGCTGTCGATGTGCGCGGCCAATGCGATCG
TGGTCAAGGACCCGGCCGAGAACCGCAAGTTCACCAAGTCCAAGGCGAGCGGCCGGATCGACGGCATGCAGGCCCTGGCC
ATGGCCGTCGGGGTGATGCCGATGGCAGAGCCACCGAAGCCGCCACCGAAGTACCAGATGTTCGTCGTCTGA

Upstream 100 bases:

>100_bases
GCCACACGCCTGCGCATCACCCGCCAGGCGACCGTGGACCCGAAGACGGTCGGCCGGTCGAATGCGAACGTGGGCCGCGC
GCGAAAGCCGTGGGAAGTGA

Downstream 100 bases:

>100_bases
TGAGCGTCACCAGCCCGCCGCGCGCGGGCTTTTTCATTTCAGGGGATCCGCATGGAACGTGCGTACTCGACACTTGTGAT
CAAGGCCCTCAGCGACGAGG

Product: phage terminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MTRSRSRGLRNIAWIESMCRIPDGKHVGQPVRLTKPQKEWIRKIYDTPTRTFILSMARKNAKTATSAFLLLLHLCGPEAK
PNSQLYSAAQSRDQAAILYGYASKVVRMSPELSEYVIPKESAKTLVCPELGTTYRALSADASTAYGLSPVFSVHDELGQV
VGPRSELYEAIETASAAHERPLSIIISTQARTDADLLSLLIDDALTGADPRVKVALHTAPMDMDPFSDKAIRAANPHFDV
FMNQEEVRKQATDAKRLPSMEAGYRNLILNQRVEAKTPFITRAVWQENGAEPDDQPGLKVYGGLDLSAVSDLTALVLASD
VGDVIPSFWLPGDGLAEKSRADRVPYDVWASKGLLKTTPGRSIEYEYVAAELRAVFDRYDVQAIAFDRWGMRHLRPWLVK
AGFTEKELAKFVDFGQGFQSMSPAIRTLEEKLLAKKLKHANHPVLSMCAANAIVVKDPAENRKFTKSKASGRIDGMQALA
MAVGVMPMAEPPKPPPKYQMFVV

Sequences:

>Translated_503_residues
MTRSRSRGLRNIAWIESMCRIPDGKHVGQPVRLTKPQKEWIRKIYDTPTRTFILSMARKNAKTATSAFLLLLHLCGPEAK
PNSQLYSAAQSRDQAAILYGYASKVVRMSPELSEYVIPKESAKTLVCPELGTTYRALSADASTAYGLSPVFSVHDELGQV
VGPRSELYEAIETASAAHERPLSIIISTQARTDADLLSLLIDDALTGADPRVKVALHTAPMDMDPFSDKAIRAANPHFDV
FMNQEEVRKQATDAKRLPSMEAGYRNLILNQRVEAKTPFITRAVWQENGAEPDDQPGLKVYGGLDLSAVSDLTALVLASD
VGDVIPSFWLPGDGLAEKSRADRVPYDVWASKGLLKTTPGRSIEYEYVAAELRAVFDRYDVQAIAFDRWGMRHLRPWLVK
AGFTEKELAKFVDFGQGFQSMSPAIRTLEEKLLAKKLKHANHPVLSMCAANAIVVKDPAENRKFTKSKASGRIDGMQALA
MAVGVMPMAEPPKPPPKYQMFVV
>Mature_502_residues
TRSRSRGLRNIAWIESMCRIPDGKHVGQPVRLTKPQKEWIRKIYDTPTRTFILSMARKNAKTATSAFLLLLHLCGPEAKP
NSQLYSAAQSRDQAAILYGYASKVVRMSPELSEYVIPKESAKTLVCPELGTTYRALSADASTAYGLSPVFSVHDELGQVV
GPRSELYEAIETASAAHERPLSIIISTQARTDADLLSLLIDDALTGADPRVKVALHTAPMDMDPFSDKAIRAANPHFDVF
MNQEEVRKQATDAKRLPSMEAGYRNLILNQRVEAKTPFITRAVWQENGAEPDDQPGLKVYGGLDLSAVSDLTALVLASDV
GDVIPSFWLPGDGLAEKSRADRVPYDVWASKGLLKTTPGRSIEYEYVAAELRAVFDRYDVQAIAFDRWGMRHLRPWLVKA
GFTEKELAKFVDFGQGFQSMSPAIRTLEEKLLAKKLKHANHPVLSMCAANAIVVKDPAENRKFTKSKASGRIDGMQALAM
AVGVMPMAEPPKPPPKYQMFVV

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 55588; Mature: 55456

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSRSRGLRNIAWIESMCRIPDGKHVGQPVRLTKPQKEWIRKIYDTPTRTFILSMARKN
CCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHC
AKTATSAFLLLLHLCGPEAKPNSQLYSAAQSRDQAAILYGYASKVVRMSPELSEYVIPKE
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHCCCCHHHHCCCCC
SAKTLVCPELGTTYRALSADASTAYGLSPVFSVHDELGQVVGPRSELYEAIETASAAHER
CCCEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PLSIIISTQARTDADLLSLLIDDALTGADPRVKVALHTAPMDMDPFSDKAIRAANPHFDV
CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCEEE
FMNQEEVRKQATDAKRLPSMEAGYRNLILNQRVEAKTPFITRAVWQENGAEPDDQPGLKV
EECHHHHHHHHHHHHHCCCHHCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEE
YGGLDLSAVSDLTALVLASDVGDVIPSFWLPGDGLAEKSRADRVPYDVWASKGLLKTTPG
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHCCCCEECCCC
RSIEYEYVAAELRAVFDRYDVQAIAFDRWGMRHLRPWLVKAGFTEKELAKFVDFGQGFQS
CCEEHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
MSPAIRTLEEKLLAKKLKHANHPVLSMCAANAIVVKDPAENRKFTKSKASGRIDGMQALA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCCCCCCHHHHHCCCCHHHHHHHH
MAVGVMPMAEPPKPPPKYQMFVV
HHHHCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
TRSRSRGLRNIAWIESMCRIPDGKHVGQPVRLTKPQKEWIRKIYDTPTRTFILSMARKN
CCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHC
AKTATSAFLLLLHLCGPEAKPNSQLYSAAQSRDQAAILYGYASKVVRMSPELSEYVIPKE
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHCCCCHHHHCCCCC
SAKTLVCPELGTTYRALSADASTAYGLSPVFSVHDELGQVVGPRSELYEAIETASAAHER
CCCEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PLSIIISTQARTDADLLSLLIDDALTGADPRVKVALHTAPMDMDPFSDKAIRAANPHFDV
CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCEEE
FMNQEEVRKQATDAKRLPSMEAGYRNLILNQRVEAKTPFITRAVWQENGAEPDDQPGLKV
EECHHHHHHHHHHHHHCCCHHCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEE
YGGLDLSAVSDLTALVLASDVGDVIPSFWLPGDGLAEKSRADRVPYDVWASKGLLKTTPG
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHCCCCEECCCC
RSIEYEYVAAELRAVFDRYDVQAIAFDRWGMRHLRPWLVKAGFTEKELAKFVDFGQGFQS
CCEEHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
MSPAIRTLEEKLLAKKLKHANHPVLSMCAANAIVVKDPAENRKFTKSKASGRIDGMQALA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCCCCCCHHHHHCCCCHHHHHHHH
MAVGVMPMAEPPKPPPKYQMFVV
HHHHCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]