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The map label for this gene is ybcS [C]

Identifier: 120610412

GI number: 120610412

Start: 1892605

End: 1893114

Strand: Direct

Name: ybcS [C]

Synonym: Aave_1729

Alternate gene names: 120610412

Gene position: 1892605-1893114 (Clockwise)

Preceding gene: 120610411

Following gene: 120610413

Centisome position: 35.36

GC content: 70.59

Gene sequence:

>510_bases
GTGCAGGCCGTGGCTGCCGACCCCGGCACGTCGCCGGCCGTGAAGATCGCCATGGTCATGGGATCGGAATACGAGTCCAG
CGGGCGGCACATCGGCACGCCCTACATCGACCGCGCAGGCCGCGGGCAGCCGCTGACCGTGTGCAACGGCGTCACCGGCC
CGGAGGTGGACGCCCGGCGCTACTACAGCCCGGCCGACTGCTACCAACTGGAGCGGGCCCGGTACATCCAGGCCGAGCGC
GACGCGGCGCGGCTGCTGCGGCACTGGCCCACCTACGACGCTTTCGCTCAGGCCACGTTCATCGACTTCGTGTGGAACAA
GGGGCCGCAGGCGCTGGAGGGCAGCACCATGCGCGCGAAGGCCAACCGTGGCGACCTCGAGGGCGCGTGCCGGGAGAACC
CCCGCTGGAACCGCGGCACCGTGCGCGGCGTGTCCACGGTACTGCCCGGGCTGCAGCTCCGCGGCGACAGCAACGACGAA
ATCTGCCGTGAATGGAGGTTGACACCATGA

Upstream 100 bases:

>100_bases
GCTGGCGCAGAAGCTGGCAGCCCTGGTGCTGCTGGCCGGCCTGGGCGGCGGCACCTACATTGCGCAGCACGCCACCGACG
CCGCGCAGCGCAATGAATAC

Downstream 100 bases:

>100_bases
AGAACTTTGCGATCGCTGTATGCGCTGCCCTGGCGCTCTCTGCCTGTACGGTGGTGCCCACCAGCACGGCCCATCAGGCA
TGCACCCTGCTGCAGATCGC

Product: putative endolysin

Products: Hydrolysed Peptidoglycan; Chitodextrin [C]

Alternate protein names: Glycoside Hydrolase Family Protein; Endolysin

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MQAVAADPGTSPAVKIAMVMGSEYESSGRHIGTPYIDRAGRGQPLTVCNGVTGPEVDARRYYSPADCYQLERARYIQAER
DAARLLRHWPTYDAFAQATFIDFVWNKGPQALEGSTMRAKANRGDLEGACRENPRWNRGTVRGVSTVLPGLQLRGDSNDE
ICREWRLTP

Sequences:

>Translated_169_residues
MQAVAADPGTSPAVKIAMVMGSEYESSGRHIGTPYIDRAGRGQPLTVCNGVTGPEVDARRYYSPADCYQLERARYIQAER
DAARLLRHWPTYDAFAQATFIDFVWNKGPQALEGSTMRAKANRGDLEGACRENPRWNRGTVRGVSTVLPGLQLRGDSNDE
ICREWRLTP
>Mature_169_residues
MQAVAADPGTSPAVKIAMVMGSEYESSGRHIGTPYIDRAGRGQPLTVCNGVTGPEVDARRYYSPADCYQLERARYIQAER
DAARLLRHWPTYDAFAQATFIDFVWNKGPQALEGSTMRAKANRGDLEGACRENPRWNRGTVRGVSTVLPGLQLRGDSNDE
ICREWRLTP

Specific function: Essential For Lysis Of Bacterial Cell Wall, By Showing Cell Wall Hydrolyzing Activity (By Similarity). [C]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.17 [C]

Molecular weight: Translated: 18775; Mature: 18775

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAVAADPGTSPAVKIAMVMGSEYESSGRHIGTPYIDRAGRGQPLTVCNGVTGPEVDARR
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
YYSPADCYQLERARYIQAERDAARLLRHWPTYDAFAQATFIDFVWNKGPQALEGSTMRAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
ANRGDLEGACRENPRWNRGTVRGVSTVLPGLQLRGDSNDEICREWRLTP
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCHHHHHHCCCCC
>Mature Secondary Structure
MQAVAADPGTSPAVKIAMVMGSEYESSGRHIGTPYIDRAGRGQPLTVCNGVTGPEVDARR
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
YYSPADCYQLERARYIQAERDAARLLRHWPTYDAFAQATFIDFVWNKGPQALEGSTMRAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
ANRGDLEGACRENPRWNRGTVRGVSTVLPGLQLRGDSNDEICREWRLTP
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Peptidoglycan (N-acetylmuraminic acid and N-acetyl-D-glucosamine Residues); Chitodextrin (N-acetyl-D-glucosamine residues) [C]

Specific reaction: Hydrolysis of beta-linkage between N-acetylmuraminic acid and N-acetyl- D-glucosamine residues in peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrin [C]

General reaction: O-Glycosyl bond hydrolysis; glycosyltransfer to saccharides other alcohols and H2O [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA