| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is iaaA [H]
Identifier: 120610339
GI number: 120610339
Start: 1815687
End: 1816679
Strand: Direct
Name: iaaA [H]
Synonym: Aave_1656
Alternate gene names: 120610339
Gene position: 1815687-1816679 (Clockwise)
Preceding gene: 120610338
Following gene: 120610340
Centisome position: 33.92
GC content: 75.63
Gene sequence:
>993_bases ATGACCGCCTTCGCCGCATCCCCGTCCGCCGTCCGCCCCGTGCCCGTAATCGCCATCCATGGCGGCGCGGGCACGCTGAA CCGCGCGCACATCAGCCCCGCCCAGGAGCAGGCCTACCATGCCGCGCTGCAGGACGTGCTGCGCGCGGGCCAGGCCGTGC TGGCGCGGGGCGGCAGCGCGGTGGATGCCGTCTGCGAAGCCGTGCGCCTGCTGGAGGAGTGCCCGCTGTTCAACGCCGGC CATGGCGCGGTGTTCACGGCCGACGCCACGCACGAACTGGACGCGGCGGTGATGGACGGCGCGAACCTGGCGGCCGGCGC GGTGGCGGGCGTGGCCCACGTGCGCAACCCGGTGCTGGCGGCCCGCGCGGTGATGCGACACGGCCAGCACGTGCTCATGG CCGGCGAGGGCGCAGAGCGCATCGCACGCGACGCGGGCCTGGAGATGGTGGAGCCGTCGCATTTCTCGACCGATGCGCGC CGCGCGCAGCTGGAGGCCGCGCGCGCCAGCCAGCGCGGCGCCGTGCTGGACCACGACGGCGCCGCGGCGCTGGCGGGCCG CGCGCTCGACGAAGACCGCAAGATGGGCACGGTGGGTGCCGTGGCGCTGGACGCGCACGGGCACCTCGCCGCCGCCACCT CCACGGGCGGCATGACCAACAAGCGCCCCGGCCGCGTGGGCGACAGCCCGCTGATCGGCGCGGGCACCTATGCCGACGAC CGCACGGCGGCCGTCTCCTGCACCGGGCACGGCGAGAGCTTCATCCGCGTGGCGGCCGCGCACGACGTCTGCGCGCGCAT GGCATACGGCGGCCAGGACCTCGCGCAGGCCGCCGATGCCGTGGTGCACGGCGCCCTGGCCGCCATCGGCGGCACCGGCG GCCTGATCGCCGTGGACCGCCTGGGCAACGTGCGCCTGCCGTTCAATACCGAGGGCATGTACCGCGGATCCGCCCGCGTG GGCGAAGCGCCCGAGACCTCCATCTACCGCTGA
Upstream 100 bases:
>100_bases CCAACGCACCGCCTCCAGCCGCTTCGCCCGTACCGTCCGCTTCGTTCCGTTCCGTTCCCGTCCGCACGCTTTCCTTTCGC CGCTTCCGCCGACCGCCCGC
Downstream 100 bases:
>100_bases GGGCGCAGCGCCCCGTTCCTCCGCCCCACGACCGACCTTTCTTTCCGCCCGCCATGAAACCCAACGCCTCGACCGCCTCC ACGACCCTCGCCCTGCCCGA
Product: asparaginase
Products: NA
Alternate protein names: Beta-aspartyl-peptidase; EcAIII; Isoaspartyl dipeptidase [H]
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MTAFAASPSAVRPVPVIAIHGGAGTLNRAHISPAQEQAYHAALQDVLRAGQAVLARGGSAVDAVCEAVRLLEECPLFNAG HGAVFTADATHELDAAVMDGANLAAGAVAGVAHVRNPVLAARAVMRHGQHVLMAGEGAERIARDAGLEMVEPSHFSTDAR RAQLEAARASQRGAVLDHDGAAALAGRALDEDRKMGTVGAVALDAHGHLAAATSTGGMTNKRPGRVGDSPLIGAGTYADD RTAAVSCTGHGESFIRVAAAHDVCARMAYGGQDLAQAADAVVHGALAAIGGTGGLIAVDRLGNVRLPFNTEGMYRGSARV GEAPETSIYR
Sequences:
>Translated_330_residues MTAFAASPSAVRPVPVIAIHGGAGTLNRAHISPAQEQAYHAALQDVLRAGQAVLARGGSAVDAVCEAVRLLEECPLFNAG HGAVFTADATHELDAAVMDGANLAAGAVAGVAHVRNPVLAARAVMRHGQHVLMAGEGAERIARDAGLEMVEPSHFSTDAR RAQLEAARASQRGAVLDHDGAAALAGRALDEDRKMGTVGAVALDAHGHLAAATSTGGMTNKRPGRVGDSPLIGAGTYADD RTAAVSCTGHGESFIRVAAAHDVCARMAYGGQDLAQAADAVVHGALAAIGGTGGLIAVDRLGNVRLPFNTEGMYRGSARV GEAPETSIYR >Mature_329_residues TAFAASPSAVRPVPVIAIHGGAGTLNRAHISPAQEQAYHAALQDVLRAGQAVLARGGSAVDAVCEAVRLLEECPLFNAGH GAVFTADATHELDAAVMDGANLAAGAVAGVAHVRNPVLAARAVMRHGQHVLMAGEGAERIARDAGLEMVEPSHFSTDARR AQLEAARASQRGAVLDHDGAAALAGRALDEDRKMGTVGAVALDAHGHLAAATSTGGMTNKRPGRVGDSPLIGAGTYADDR TAAVSCTGHGESFIRVAAAHDVCARMAYGGQDLAQAADAVVHGALAAIGGTGGLIAVDRLGNVRLPFNTEGMYRGSARVG EAPETSIYR
Specific function: May be involved in glutathione, and possibly other peptide, transport, although these results could also be due to polar effects of disruption [H]
COG id: COG1446
COG function: function code E; Asparaginase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Ntn-hydrolase family [H]
Homologues:
Organism=Homo sapiens, GI145275202, Length=308, Percent_Identity=37.012987012987, Blast_Score=181, Evalue=1e-45, Organism=Homo sapiens, GI145275200, Length=308, Percent_Identity=37.012987012987, Blast_Score=181, Evalue=1e-45, Organism=Homo sapiens, GI98991769, Length=272, Percent_Identity=31.6176470588235, Blast_Score=109, Evalue=5e-24, Organism=Homo sapiens, GI285002251, Length=262, Percent_Identity=32.0610687022901, Blast_Score=87, Evalue=2e-17, Organism=Escherichia coli, GI1787050, Length=315, Percent_Identity=62.8571428571429, Blast_Score=369, Evalue=1e-103, Organism=Caenorhabditis elegans, GI32564649, Length=262, Percent_Identity=26.3358778625954, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI18921183, Length=321, Percent_Identity=34.5794392523364, Blast_Score=171, Evalue=9e-43, Organism=Drosophila melanogaster, GI21357893, Length=269, Percent_Identity=31.2267657992565, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI221330102, Length=234, Percent_Identity=34.6153846153846, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI24652135, Length=234, Percent_Identity=34.6153846153846, Blast_Score=95, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000246 [H]
Pfam domain/function: PF01112 Asparaginase_2 [H]
EC number: =3.4.19.5 [H]
Molecular weight: Translated: 33486; Mature: 33355
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAFAASPSAVRPVPVIAIHGGAGTLNRAHISPAQEQAYHAALQDVLRAGQAVLARGGSA CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCCH VDAVCEAVRLLEECPLFNAGHGAVFTADATHELDAAVMDGANLAAGAVAGVAHVRNPVLA HHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCHHHH ARAVMRHGQHVLMAGEGAERIARDAGLEMVEPSHFSTDARRAQLEAARASQRGAVLDHDG HHHHHHCCCEEEEECCCHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEECCC AAALAGRALDEDRKMGTVGAVALDAHGHLAAATSTGGMTNKRPGRVGDSPLIGAGTYADD HHHHHCCHHCHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCC RTAAVSCTGHGESFIRVAAAHDVCARMAYGGQDLAQAADAVVHGALAAIGGTGGLIAVDR CCEEEEECCCCCHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC LGNVRLPFNTEGMYRGSARVGEAPETSIYR CCCEECCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TAFAASPSAVRPVPVIAIHGGAGTLNRAHISPAQEQAYHAALQDVLRAGQAVLARGGSA CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCCH VDAVCEAVRLLEECPLFNAGHGAVFTADATHELDAAVMDGANLAAGAVAGVAHVRNPVLA HHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCHHHH ARAVMRHGQHVLMAGEGAERIARDAGLEMVEPSHFSTDARRAQLEAARASQRGAVLDHDG HHHHHHCCCEEEEECCCHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEECCC AAALAGRALDEDRKMGTVGAVALDAHGHLAAATSTGGMTNKRPGRVGDSPLIGAGTYADD HHHHHCCHHCHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCC RTAAVSCTGHGESFIRVAAAHDVCARMAYGGQDLAQAADAVVHGALAAIGGTGGLIAVDR CCEEEEECCCCCHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC LGNVRLPFNTEGMYRGSARVGEAPETSIYR CCCEECCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 3045084; 7984428 [H]