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The map label for this gene is xerC [H]

Identifier: 120609495

GI number: 120609495

Start: 862544

End: 863524

Strand: Direct

Name: xerC [H]

Synonym: Aave_0801

Alternate gene names: 120609495

Gene position: 862544-863524 (Clockwise)

Preceding gene: 120609494

Following gene: 120609496

Centisome position: 16.11

GC content: 74.82

Gene sequence:

>981_bases
ATGGCGGACGGCCCGCAGCCGGTGGTGCCCACCGATCCCGAGGTGCTGCGCTACCTGGAGCACGTGCGCGTGGAAAAGCG
CCTGGCGGAGCGCACCGTCACGCTCTACACGCTCGACCTGGCGAAGCTGGCCGCCAGCGCGCGCGATGCGGGCGTGCCGC
TGCTGCAACTGCAGACCGCGCACATCCGCCGCTTCGTCGCGCAGATGCATGCGGGCGGGCGCAGCGGGCGGGGCATCGCG
CTGATCCTGTCGGGCTGGCGCGGCTTCTTCGCCTGGGCGGCGCGGCAGGGCCTCGTGCCCCACAACCCCGTGCAGGGCGT
GCGCGCCCCGCGCGCGCCCAAGCCGCTGCCCAAGGCGCTGGGCGTGGACGACGCGGTGCGGCTGGCGGAGTTCGAGGGCT
CGTCGGGCAGCGACCCGTGGCTGGAGGCCCGCGATGCGGCGATGGTCGAACTGCTCTACGGCTGCGGCCTGCGCGTGGGG
GAACTGGCGGGCCTGGACGCCGTGCCGGGGCCGGACACGCAGCGCCAGGGCCGGGGCTGGATCGACCTGGAGGCGGCCGA
GGCGCACGTCTTCGGCAAAGGCTCGAAGCGGCGCAGCGTGCCGGTCGGCTCGGCCGCGCTGGCGGCCCTGCGCGCCTGGC
TGGAAGTGCGCCTGCAGCCCTTCGGCGCGGCGTCCGGCCGGGTGGATGCCGCGCTCTTCCTGGGCCGGCGCGGCGCACGG
CTCACGGGGCAGTCCATCTGGTCGCGCCTGCGGCAGCGCAGCCAGCTCGCCGGGCTCTCCACCCCCGTGCATCCGCACAT
GCTGCGGCATTCCTTCGCGAGCCACCTGCTGCAGTCCAGCGGCGACCTGCGGGCGGTGCAGGAACTGCTGGGCCACGCCA
ACATCACCACCACCCAGGTCTATACGCGCCTGGATTTCCAGCACCTCGCCAAGGTGTACGACGCCGCGCATCCGCGGGCG
CGCCGCAAGCCCGGCGGCTGA

Upstream 100 bases:

>100_bases
CCCGATCCGCAGCGCTTCGGCGCCGACATGGGCACCGACTTCCTCGTGCGCATGGCCGAACTGGCCAGCTCGGCGCTCTC
GCGCCTGCGCTGATCCGGCC

Downstream 100 bases:

>100_bases
CGGCCGGCGACGGGCTGCCCCTTCCGGGGCGGCAGGAATTTTCCGTGCTGCAGAATATCGACCCATGCCCCGTCCCCCCG
CCACGCTGTTTTCTTCCTCC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MADGPQPVVPTDPEVLRYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGRSGRGIA
LILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGSSGSDPWLEARDAAMVELLYGCGLRVG
ELAGLDAVPGPDTQRQGRGWIDLEAAEAHVFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGAR
LTGQSIWSRLRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRA
RRKPGG

Sequences:

>Translated_326_residues
MADGPQPVVPTDPEVLRYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGRSGRGIA
LILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGSSGSDPWLEARDAAMVELLYGCGLRVG
ELAGLDAVPGPDTQRQGRGWIDLEAAEAHVFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGAR
LTGQSIWSRLRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRA
RRKPGG
>Mature_325_residues
ADGPQPVVPTDPEVLRYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGRSGRGIAL
ILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGSSGSDPWLEARDAAMVELLYGCGLRVGE
LAGLDAVPGPDTQRQGRGWIDLEAAEAHVFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGARL
TGQSIWSRLRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAR
RKPGG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=310, Percent_Identity=44.5161290322581, Blast_Score=244, Evalue=7e-66,
Organism=Escherichia coli, GI1789261, Length=310, Percent_Identity=34.5161290322581, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1790768, Length=163, Percent_Identity=33.1288343558282, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790767, Length=181, Percent_Identity=31.4917127071823, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35326; Mature: 35195

Theoretical pI: Translated: 11.32; Mature: 11.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADGPQPVVPTDPEVLRYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCEEHHHH
HIRRFVAQMHAGGRSGRGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKAL
HHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHC
GVDDAVRLAEFEGSSGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGW
CCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCC
IDLEAAEAHVFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGAR
EEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC
LTGQSIWSRLRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQV
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHH
YTRLDFQHLAKVYDAAHPRARRKPGG
HHHHCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ADGPQPVVPTDPEVLRYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCEEHHHH
HIRRFVAQMHAGGRSGRGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKAL
HHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHC
GVDDAVRLAEFEGSSGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGW
CCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCC
IDLEAAEAHVFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGAR
EEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC
LTGQSIWSRLRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQV
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHH
YTRLDFQHLAKVYDAAHPRARRKPGG
HHHHCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA