| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is nfdA [H]
Identifier: 120609454
GI number: 120609454
Start: 814599
End: 816491
Strand: Direct
Name: nfdA [H]
Synonym: Aave_0760
Alternate gene names: 120609454
Gene position: 814599-816491 (Clockwise)
Preceding gene: 120609453
Following gene: 120609455
Centisome position: 15.22
GC content: 70.21
Gene sequence:
>1893_bases ATGACCACACCCGCCACCACTGCCGACCTGATCCTGCGCAACGGCCGCTTCACCACGCTGGACCGCGCCAATCCCACGGC GAGCGCCGTCGCCATCGCGCAGGGGCGCTTCACCCGGGTGGGTGGCGACCGCGAAGTCATGGCGCTGGCCGGGCCGCAGA CGCGGGTGATCGACCTGGGCGGGCGCAGCGTGCTGCCGGGGCTGATCGACAACCACCTGCACATCATCCGCGGCGGGCTG AACTTCAACATGGAGCTGCGCTGGGACGGGGTGAAGAGCCTGGCCGATGCGATGGCGATGCTCAAGCGCCAGGTGGACGT GACGCCCGCGCCGCAGTGGGTGCGGGTGGTGGGCGGCTTCACCGAGCACCAGTTCGTGGAAAAGCGCCTGCCCACGCTGG CGGAGCTGAACGCCGTGGCGCCGGACACGCCGGTGTTCATCCTGCACCTGTACGACCGCGCGCTGCTCAACGGCGCCGCG CTGCGGGCCGTGGGCTACGGCCGCGACACGCCCGCGCCGCCCGGCGGCGAGATCGTGCGCGACAGCGCGGGCAACCCCAC GGGCCTGCTGCTGGCCAAGCCCAATGCGGCCATCCTGTACGCCACGCTGGCCAAGGGCCCGAAGCTGCCGCACGAATACC AGGTGAACTCCACGCGCCACTTCATGCGCGAGCTCAACCGCCTGGGCGTGACCGGCGCGATCGACGCGGGCGGCGGCATG CAGAACTACCCCGACGACTACCAGGTGATCCAGGAACTGGCCGACGCCGGCCAGCTCACGATCCGCCTGGCCTACAACCT GTTCACGCAAAAGCCCAAGGAAGAGAAGGCCGACTTCCTGCACTGGACGGCCACCTCGCAGTACAAGCAGGGCACGGATT ACTTCCGCCACAACGGCGCGGGCGAGATGCTGGTGTTCTCGGCCGCGGACTTCGAGGATTTCCGGCAGCCGCGCCCCGAG CTGGCGCCGGAGATGGAAGGCGAGCTGGAGGAGGTGGTGCGCATCCTGGCGCAGAACCGCTGGCCCTGGCGCATGCACGC CACCTACGACGAGACCATCGATCGCGCGCTCGGCGTGTTCGAGAAGGTGAACCGGGACACGCCGCTGGCCGGCCTGAACT GGTTCTTCGACCACGCCGAGACCATCTCGGAAAAATCCATCGACCGCATCGCGGCCCTGGGCGGCGGCGTGGCCGTGCAG CACCGCATGGCCTACCAGGGCGAGTATTTCATGGAGCGCTACGGCGCCGCCGCGGCAGAGGCCACGCCGCCCGTCAAGCG CATGCTGGAGAAGGGCGTTCAAGTCTCCGCCGGCACCGACGCCACCCGCGTCGCGAGCTACAACCCCTGGGTGTCGCTGT CGTGGCTGGTGACCGGCAGGACGGTGGGCGGCCTGCAGATCACGCCGCAGCGCAACTGCCTCACCCGTGACCAGGCGCTG CGCATGTGGACCGAGAACGTCACCTGGTTCAGCAACGAGCAGGGCAGGAAGGGCCGCATCCAGGAGGGCCAGCTGGCCGA CCTGGTCGTGCCCGACCGCGACTTCTTCGCCTGCGCCGAATCCGAGATCGCCGACACCACGGCCCTGCTCACGATGGTGG CTGGCAAGGTGGTCTATGGCGCGGGCGATTTCGCCCGCTTCGACGAAGGCGCGCCGCCGCCGGCCATGCCCGACTGGTCG CCCGTGCGCACCTTCCGCGGCTATGGCGCGTGGGGCGTTCAGGAGGGTGCGCCGCTGCAGGCGGTGATGCGCAACGCGGC GGCGAGCTGCGGCTGCGCCAGCCAGTGCAACCTGCACGGCCACGCGCATGCCACGGCCTGGAGCAGCCGGCTGCCCGTGT CCGACCTGAAGGGCTTCTGGGGCGCGCTGGGCTGCGCCTGCTGGGCGGTGTGA
Upstream 100 bases:
>100_bases ACGGCCTGGGGATCACTTACGCCAAGACCATGTTCAACGCCCACGAAGGCTGAAAAAAAGGCGCTCTGCCATCGTCAAAC CCCTTGAAGGCCTGAACACC
Downstream 100 bases:
>100_bases CGTGGACGGGATGCTGCATGCCGCGGCCGCCGCCTCCTGGGTGCAGCCGCTGGCCCTGCTGTGCCTGTGCGCGGCCTACC TGCAGGGTGGATGGGACAAG
Product: amidohydrolase 3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 630; Mature: 629
Protein sequence:
>630_residues MTTPATTADLILRNGRFTTLDRANPTASAVAIAQGRFTRVGGDREVMALAGPQTRVIDLGGRSVLPGLIDNHLHIIRGGL NFNMELRWDGVKSLADAMAMLKRQVDVTPAPQWVRVVGGFTEHQFVEKRLPTLAELNAVAPDTPVFILHLYDRALLNGAA LRAVGYGRDTPAPPGGEIVRDSAGNPTGLLLAKPNAAILYATLAKGPKLPHEYQVNSTRHFMRELNRLGVTGAIDAGGGM QNYPDDYQVIQELADAGQLTIRLAYNLFTQKPKEEKADFLHWTATSQYKQGTDYFRHNGAGEMLVFSAADFEDFRQPRPE LAPEMEGELEEVVRILAQNRWPWRMHATYDETIDRALGVFEKVNRDTPLAGLNWFFDHAETISEKSIDRIAALGGGVAVQ HRMAYQGEYFMERYGAAAAEATPPVKRMLEKGVQVSAGTDATRVASYNPWVSLSWLVTGRTVGGLQITPQRNCLTRDQAL RMWTENVTWFSNEQGRKGRIQEGQLADLVVPDRDFFACAESEIADTTALLTMVAGKVVYGAGDFARFDEGAPPPAMPDWS PVRTFRGYGAWGVQEGAPLQAVMRNAAASCGCASQCNLHGHAHATAWSSRLPVSDLKGFWGALGCACWAV
Sequences:
>Translated_630_residues MTTPATTADLILRNGRFTTLDRANPTASAVAIAQGRFTRVGGDREVMALAGPQTRVIDLGGRSVLPGLIDNHLHIIRGGL NFNMELRWDGVKSLADAMAMLKRQVDVTPAPQWVRVVGGFTEHQFVEKRLPTLAELNAVAPDTPVFILHLYDRALLNGAA LRAVGYGRDTPAPPGGEIVRDSAGNPTGLLLAKPNAAILYATLAKGPKLPHEYQVNSTRHFMRELNRLGVTGAIDAGGGM QNYPDDYQVIQELADAGQLTIRLAYNLFTQKPKEEKADFLHWTATSQYKQGTDYFRHNGAGEMLVFSAADFEDFRQPRPE LAPEMEGELEEVVRILAQNRWPWRMHATYDETIDRALGVFEKVNRDTPLAGLNWFFDHAETISEKSIDRIAALGGGVAVQ HRMAYQGEYFMERYGAAAAEATPPVKRMLEKGVQVSAGTDATRVASYNPWVSLSWLVTGRTVGGLQITPQRNCLTRDQAL RMWTENVTWFSNEQGRKGRIQEGQLADLVVPDRDFFACAESEIADTTALLTMVAGKVVYGAGDFARFDEGAPPPAMPDWS PVRTFRGYGAWGVQEGAPLQAVMRNAAASCGCASQCNLHGHAHATAWSSRLPVSDLKGFWGALGCACWAV >Mature_629_residues TTPATTADLILRNGRFTTLDRANPTASAVAIAQGRFTRVGGDREVMALAGPQTRVIDLGGRSVLPGLIDNHLHIIRGGLN FNMELRWDGVKSLADAMAMLKRQVDVTPAPQWVRVVGGFTEHQFVEKRLPTLAELNAVAPDTPVFILHLYDRALLNGAAL RAVGYGRDTPAPPGGEIVRDSAGNPTGLLLAKPNAAILYATLAKGPKLPHEYQVNSTRHFMRELNRLGVTGAIDAGGGMQ NYPDDYQVIQELADAGQLTIRLAYNLFTQKPKEEKADFLHWTATSQYKQGTDYFRHNGAGEMLVFSAADFEDFRQPRPEL APEMEGELEEVVRILAQNRWPWRMHATYDETIDRALGVFEKVNRDTPLAGLNWFFDHAETISEKSIDRIAALGGGVAVQH RMAYQGEYFMERYGAAAAEATPPVKRMLEKGVQVSAGTDATRVASYNPWVSLSWLVTGRTVGGLQITPQRNCLTRDQALR MWTENVTWFSNEQGRKGRIQEGQLADLVVPDRDFFACAESEIADTTALLTMVAGKVVYGAGDFARFDEGAPPPAMPDWSP VRTFRGYGAWGVQEGAPLQAVMRNAAASCGCASQCNLHGHAHATAWSSRLPVSDLKGFWGALGCACWAV
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 69009; Mature: 68878
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPATTADLILRNGRFTTLDRANPTASAVAIAQGRFTRVGGDREVMALAGPQTRVIDLG CCCCCCCHHHEEECCCEEEECCCCCCHHEEEEECCCEEECCCCCEEEEEECCCEEEEECC GRSVLPGLIDNHLHIIRGGLNFNMELRWDGVKSLADAMAMLKRQVDVTPAPQWVRVVGGF CCCCCCHHHCCCEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCC TEHQFVEKRLPTLAELNAVAPDTPVFILHLYDRALLNGAALRAVGYGRDTPAPPGGEIVR HHHHHHHHHCCHHHHHCCCCCCCCEEEEEEHHHHHHCCHHHEEECCCCCCCCCCCCCEEE DSAGNPTGLLLAKPNAAILYATLAKGPKLPHEYQVNSTRHFMRELNRLGVTGAIDAGGGM CCCCCCCEEEEECCCCEEEEEEECCCCCCCCCEECCHHHHHHHHHHHCCCCEEECCCCCC QNYPDDYQVIQELADAGQLTIRLAYNLFTQKPKEEKADFLHWTATSQYKQGTDYFRHNGA CCCCHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHCCEEEEECCCCHHCCCHHHHHCCC GEMLVFSAADFEDFRQPRPELAPEMEGELEEVVRILAQNRWPWRMHATYDETIDRALGVF CCEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH EKVNRDTPLAGLNWFFDHAETISEKSIDRIAALGGGVAVQHRMAYQGEYFMERYGAAAAE HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCCCCC ATPPVKRMLEKGVQVSAGTDATRVASYNPWVSLSWLVTGRTVGGLQITPQRNCLTRDQAL CCCHHHHHHHCCCEEECCCCCCEEECCCCCEEEEEEEECCEECCEEECCCCCHHHHHHHH RMWTENVTWFSNEQGRKGRIQEGQLADLVVPDRDFFACAESEIADTTALLTMVAGKVVYG HHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHEEC AGDFARFDEGAPPPAMPDWSPVRTFRGYGAWGVQEGAPLQAVMRNAAASCGCASQCNLHG CCCHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC HAHATAWSSRLPVSDLKGFWGALGCACWAV CCCCCHHCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTPATTADLILRNGRFTTLDRANPTASAVAIAQGRFTRVGGDREVMALAGPQTRVIDLG CCCCCCHHHEEECCCEEEECCCCCCHHEEEEECCCEEECCCCCEEEEEECCCEEEEECC GRSVLPGLIDNHLHIIRGGLNFNMELRWDGVKSLADAMAMLKRQVDVTPAPQWVRVVGGF CCCCCCHHHCCCEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCC TEHQFVEKRLPTLAELNAVAPDTPVFILHLYDRALLNGAALRAVGYGRDTPAPPGGEIVR HHHHHHHHHCCHHHHHCCCCCCCCEEEEEEHHHHHHCCHHHEEECCCCCCCCCCCCCEEE DSAGNPTGLLLAKPNAAILYATLAKGPKLPHEYQVNSTRHFMRELNRLGVTGAIDAGGGM CCCCCCCEEEEECCCCEEEEEEECCCCCCCCCEECCHHHHHHHHHHHCCCCEEECCCCCC QNYPDDYQVIQELADAGQLTIRLAYNLFTQKPKEEKADFLHWTATSQYKQGTDYFRHNGA CCCCHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHCCEEEEECCCCHHCCCHHHHHCCC GEMLVFSAADFEDFRQPRPELAPEMEGELEEVVRILAQNRWPWRMHATYDETIDRALGVF CCEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH EKVNRDTPLAGLNWFFDHAETISEKSIDRIAALGGGVAVQHRMAYQGEYFMERYGAAAAE HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCCCCC ATPPVKRMLEKGVQVSAGTDATRVASYNPWVSLSWLVTGRTVGGLQITPQRNCLTRDQAL CCCHHHHHHHCCCEEECCCCCCEEECCCCCEEEEEEEECCEECCEEECCCCCHHHHHHHH RMWTENVTWFSNEQGRKGRIQEGQLADLVVPDRDFFACAESEIADTTALLTMVAGKVVYG HHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHEEC AGDFARFDEGAPPPAMPDWSPVRTFRGYGAWGVQEGAPLQAVMRNAAASCGCASQCNLHG CCCHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC HAHATAWSSRLPVSDLKGFWGALGCACWAV CCCCCHHCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA