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The map label for this gene is trbF [H]

Identifier: 120609429

GI number: 120609429

Start: 786988

End: 787692

Strand: Direct

Name: trbF [H]

Synonym: Aave_0733

Alternate gene names: 120609429

Gene position: 786988-787692 (Clockwise)

Preceding gene: 120609428

Following gene: 120609430

Centisome position: 14.7

GC content: 66.52

Gene sequence:

>705_bases
ATGCGATTCAAACGACCGCAGGTGCGCTATGCCGATACGCCGCAGCCTGCCACTCCGTATCAAGCCGCTGCCCAGGTCTG
GGACGAGCGCATCGGCTCGGCCCGCGTGCAGGCCAAGAACTGGCGGCTGATGGCCTTCGGCTGCCTGGTGCTCGCGCTGC
TGATGGCCGGTGGCCTGGTGTGGCGATCGGCACAGTCCATCGTCACGCCCTACGTCATCGAGGTGGATCAGTCCGGCCAG
GTGCGCACCGTGGGCGAAGCTGCCACGCCGTACCGGCCCACCGATGCGCAGACCGCGCACCACATCGCGCGCTTCCTGAC
GCTGGTGCGCTCGCTGTCCATCGACCCCATCGTCGTGCGGCAGAACTGGCTGGATGCCTACGACTACACCACCGATCGGG
GCGCGGCGGTGCTCAACGACTATGCGCGGGTGAATGACCCGTTCGCCCGCATCGGCAAGGAGTCGGTGACGGTGCAGATC
ACCAGTGTGGTTCGCGCCAGCGATGCGTCGTTCAACGTGCGCTGGACGGAACGCCGCTACGTCAATGGCGCGGCGGCCGG
GCTGGAGCGATGGACGGCGGTGGTGTCCATCGTGCAGCAGACCCCACGCACCGAAGAACGCCTGCGCCGCAACCCGCTGG
GCATTTACGTCAATGGCTTGTCGTGGAGCCGCGAGCTGGATTCTTCCGAAGGAGCCAAACCATGA

Upstream 100 bases:

>100_bases
TCGCGCACACGCTGCGCGGTGGCGACGGCGGCGGTTCGGGCCAAGGCCCGAGCCTGCGCCCCGATGAATGACCCGATAGC
TGACTTTTAAGGAGAACCCC

Downstream 100 bases:

>100_bases
ATGCACGTTTCCGTAAAACCGCATTGCCGGTGATCCTGCTGGCATCGACTGTTCTGTTTGCAGGCTGCGCCATGCAAGGC
AAACCGCCGCCGGTGATCTC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQSGQ
VRTVGEAATPYRPTDAQTAHHIARFLTLVRSLSIDPIVVRQNWLDAYDYTTDRGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDASFNVRWTERRYVNGAAAGLERWTAVVSIVQQTPRTEERLRRNPLGIYVNGLSWSRELDSSEGAKP

Sequences:

>Translated_234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQSGQ
VRTVGEAATPYRPTDAQTAHHIARFLTLVRSLSIDPIVVRQNWLDAYDYTTDRGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDASFNVRWTERRYVNGAAAGLERWTAVVSIVQQTPRTEERLRRNPLGIYVNGLSWSRELDSSEGAKP
>Mature_234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQSGQ
VRTVGEAATPYRPTDAQTAHHIARFLTLVRSLSIDPIVVRQNWLDAYDYTTDRGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDASFNVRWTERRYVNGAAAGLERWTAVVSIVQQTPRTEERLRRNPLGIYVNGLSWSRELDSSEGAKP

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26207; Mature: 26207

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCHH
WRSAQSIVTPYVIEVDQSGQVRTVGEAATPYRPTDAQTAHHIARFLTLVRSLSIDPIVVR
HHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDRGAAVLNDYARVNDPFARIGKESVTVQITSVVRASDASFNVRWTERRY
CCCCHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCEEEEEEEEEEECCCCEEEEECHHHH
VNGAAAGLERWTAVVSIVQQTPRTEERLRRNPLGIYVNGLSWSRELDSSEGAKP
HCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCHH
WRSAQSIVTPYVIEVDQSGQVRTVGEAATPYRPTDAQTAHHIARFLTLVRSLSIDPIVVR
HHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDRGAAVLNDYARVNDPFARIGKESVTVQITSVVRASDASFNVRWTERRY
CCCCHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCEEEEEEEEEEECCCCEEEEECHHHH
VNGAAAGLERWTAVVSIVQQTPRTEERLRRNPLGIYVNGLSWSRELDSSEGAKP
HCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]