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The map label for this gene is yvbU [H]

Identifier: 120609412

GI number: 120609412

Start: 771189

End: 772073

Strand: Reverse

Name: yvbU [H]

Synonym: Aave_0716

Alternate gene names: 120609412

Gene position: 772073-771189 (Counterclockwise)

Preceding gene: 120609435

Following gene: 120609408

Centisome position: 14.42

GC content: 62.6

Gene sequence:

>885_bases
ATGCAATGGACACTGGATCAACTTCGCCAATTCGTGACGACCGCCGACAGCGGCTCGTTCAGTGCGGCTGCCCGGCAGTT
GGGCAAGGCCCAATCGGCGGTCAGCACTGCCATTGGCCTGCTGGAGGCCGATCTGGGTGTGGAATTGTTCGACCGTTCAC
GGCGTAACGCGCAGCTCACCGATGCAGGGCAAGTGCTGCTGCTGGAAGCGCGCGAGTTGCTACGCCAGGCCGAGTCTCTG
GACAAACGCGCACGCGCCCTGCACGGCGGTAGCGAAGCCACGCTGACCCTGGCGCTGGACGAAGCCTTGCCCTATGCCGC
GATCAACGCCTTGATTCGTGAGATCGCCACGCGTTTTCCCGACCTGGATCTCACCCTGCTCAATGGCACTGCTACCGAAG
TGGCCAGCTACGTGGATGAGGAGCGGGCTCAGATCGCCTTTCATTTCGTGCGCGGCGCGCTACCGGCTTGCTTCGATCAG
CGCCACATCGGCGCCGTGCCGCAAGGAGCCTTCGTGGCCGAAGGGCATGCCTTGGCGCGACTCAAAACTGTCCAGCGCAA
GGATCTGGCCAGGTACCGCCAACTCATCCTCGAAGCCGAGGACGTACAGGAAACCGCCTACAGCCCCCGTCTGTGGCGCT
CGGACAGTTTCTACAGCATCGCCGAGATGGTGGCCGACGACCTGGGCTGGGCCATCCTGCCCATCAACATTGGCACCTAC
CAGGCCTATCGCAAGCCACTAAAGCAGTTGCATTGCCCATCGCTCGCGCTACCTCCGCTGTCGGTGCGCATGCTGTGGTG
TCAGGGCTGGCACCCGACACTGACCGTACAGTGGGTGCAGACCCGCTTCGCGGAATTGATTCATCAGGCACAAGCCAATC
CGTGA

Upstream 100 bases:

>100_bases
GTGCGATTGGCCCGGAGATGCGAGCCGATCCAGGCATTTTCCAGCTATATTGGAGATCAATAAAGTTGGATTTCATCAAC
TAAATTGATAGAATTTCCAT

Downstream 100 bases:

>100_bases
GAAGCAACTTCCCGCTTTCCCTCGCGGACGATCGCCTCCCGACCTGCCTGCCTGCATGACTGGCGTCGGCGCGCAATTGA
CGATGGGCAGACCGTGGACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MQWTLDQLRQFVTTADSGSFSAAARQLGKAQSAVSTAIGLLEADLGVELFDRSRRNAQLTDAGQVLLLEARELLRQAESL
DKRARALHGGSEATLTLALDEALPYAAINALIREIATRFPDLDLTLLNGTATEVASYVDEERAQIAFHFVRGALPACFDQ
RHIGAVPQGAFVAEGHALARLKTVQRKDLARYRQLILEAEDVQETAYSPRLWRSDSFYSIAEMVADDLGWAILPINIGTY
QAYRKPLKQLHCPSLALPPLSVRMLWCQGWHPTLTVQWVQTRFAELIHQAQANP

Sequences:

>Translated_294_residues
MQWTLDQLRQFVTTADSGSFSAAARQLGKAQSAVSTAIGLLEADLGVELFDRSRRNAQLTDAGQVLLLEARELLRQAESL
DKRARALHGGSEATLTLALDEALPYAAINALIREIATRFPDLDLTLLNGTATEVASYVDEERAQIAFHFVRGALPACFDQ
RHIGAVPQGAFVAEGHALARLKTVQRKDLARYRQLILEAEDVQETAYSPRLWRSDSFYSIAEMVADDLGWAILPINIGTY
QAYRKPLKQLHCPSLALPPLSVRMLWCQGWHPTLTVQWVQTRFAELIHQAQANP
>Mature_294_residues
MQWTLDQLRQFVTTADSGSFSAAARQLGKAQSAVSTAIGLLEADLGVELFDRSRRNAQLTDAGQVLLLEARELLRQAESL
DKRARALHGGSEATLTLALDEALPYAAINALIREIATRFPDLDLTLLNGTATEVASYVDEERAQIAFHFVRGALPACFDQ
RHIGAVPQGAFVAEGHALARLKTVQRKDLARYRQLILEAEDVQETAYSPRLWRSDSFYSIAEMVADDLGWAILPINIGTY
QAYRKPLKQLHCPSLALPPLSVRMLWCQGWHPTLTVQWVQTRFAELIHQAQANP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=203, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI145693105, Length=246, Percent_Identity=26.0162601626016, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786508, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787949, Length=179, Percent_Identity=28.4916201117318, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=177, Percent_Identity=32.2033898305085, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786401, Length=133, Percent_Identity=36.0902255639098, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789492, Length=115, Percent_Identity=39.1304347826087, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786713, Length=116, Percent_Identity=35.3448275862069, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789639, Length=125, Percent_Identity=28, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788748, Length=126, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787879, Length=194, Percent_Identity=27.8350515463918, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32659; Mature: 32659

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWTLDQLRQFVTTADSGSFSAAARQLGKAQSAVSTAIGLLEADLGVELFDRSRRNAQLT
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC
DAGQVLLLEARELLRQAESLDKRARALHGGSEATLTLALDEALPYAAINALIREIATRFP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHCC
DLDLTLLNGTATEVASYVDEERAQIAFHFVRGALPACFDQRHIGAVPQGAFVAEGHALAR
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCEEECCHHHHH
LKTVQRKDLARYRQLILEAEDVQETAYSPRLWRSDSFYSIAEMVADDLGWAILPINIGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCHH
QAYRKPLKQLHCPSLALPPLSVRMLWCQGWHPTLTVQWVQTRFAELIHQAQANP
HHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCEEHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQWTLDQLRQFVTTADSGSFSAAARQLGKAQSAVSTAIGLLEADLGVELFDRSRRNAQLT
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC
DAGQVLLLEARELLRQAESLDKRARALHGGSEATLTLALDEALPYAAINALIREIATRFP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHCC
DLDLTLLNGTATEVASYVDEERAQIAFHFVRGALPACFDQRHIGAVPQGAFVAEGHALAR
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCEEECCHHHHH
LKTVQRKDLARYRQLILEAEDVQETAYSPRLWRSDSFYSIAEMVADDLGWAILPINIGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCHH
QAYRKPLKQLHCPSLALPPLSVRMLWCQGWHPTLTVQWVQTRFAELIHQAQANP
HHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCEEHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]