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The map label for this gene is ybjD [C]

Identifier: 120609373

GI number: 120609373

Start: 736081

End: 738219

Strand: Reverse

Name: ybjD [C]

Synonym: Aave_0676

Alternate gene names: 120609373

Gene position: 738219-736081 (Counterclockwise)

Preceding gene: 120609379

Following gene: 120609372

Centisome position: 13.79

GC content: 53.34

Gene sequence:

>2139_bases
ATGCACATCTCCAAGCTCAGCCTGGTCAACTACAGAAACTTTGCCAACACCAAGCTCCTGTTTCAAAAGGGCATCAACAC
CATCATTGGCGAAAACGGATCAGGTAAAACGAATCTGTTCCGAGCAATCAGGCTGCTGCTTGATGACAACATGATTCGAT
CCGCCTACCGATTGGAATCAACTGACTTTCATAGAGGTCTAGGAAGGTGGCAGGGGCATTGGATCATCATCAGCCTTGAG
TTCGAGGAGATCTCGGCTGACGAAGCAGTCCAGGCCTTGTTTAGGCATGGGACGGGCGGCATCGACGATGAGGCAATCGG
CAAAGCCACCTACAACCTCATCTTTCGCCCAAAGAAAGAGATCAGGCTTCGCCTCTCTCAATTGGACGATGGCGATCACG
CTGGTCTCGCTGCGATCCTGAATCCTGTCACGCTGGACGACTACGAAACCATCTTCACGGGCCGAAGCGACGCTGACTTC
AACGACGAGGCCTTCTACAAGGAGGTGGTCGGTGACTTCGAGAAGGCCAGGTTCAACGAAGAAATTGAGTTTCCCGCTAT
CGGTGCCAAGATTCCGAGCGTGCTGTCCGTGTCCAAGGAGATTTCCTTCACCTTCGTTCAGGCACTTCGAGACGTTGTAT
CGGAGTTTCATAACAACAGGACCAATCCACTTTTGTCGCTGCTCAAGGGAAAGAGCGGCGATATAGATCCAGTGGCATTC
CAGCTCATCACCGATGGGGTGAAGGCTTTGAATGATTCGATCGAGGCATTGCCGGACGTGCAGGTCGTCCGGAGCGATAT
CAGCGACACCATCAAGGATGCGGCGGGCGAGGCGTACTCCCCCTCATCCCTGTCGATTAAGTCCGATCTGCCTGACGAAG
CTGACAAACTGTTCCAGTCGCTCAAGCTCTTTGTCGGCGAGTCGGGAGAAGGCCACGAAGGGCCGATCCATGAGTTGAGC
CTGGGTGGAGCGAACCTGATCTTCCTCACCTTGAAACTGCTGGAATTCAAGTATCAGAAAGCCAAGCAGTCGATCGCAAA
CTTCTTGTTGATCGAAGAGCCAGAGGCCCACATCCATACACACATTCAGAAGACGCTGTTCGACCGGCTTCAGTACGACG
ACACCCAGATCATCTATTCGACCCATTCGACGCATATCTCAGAGGTCAGCAACGTTCAGAACGTAAATATTCTTGGCCGG
GAGCGTGATCGATGCGAGGCCTACCAACCGTCCACGGGCCTGGGGCCAGAAGAGATCGGCAACATCCAACGCTACTTGGA
TGCAGTTCGCAGCAACCTGTTGTTTGCCAAGAGTGTCATTCTGGTAGAGGGCGATGCCGAAGAAATCCTGATCCCGATTC
TGGTCAAGAAGGTGCTGGGCATCAGTCTGGATGAACTCGGAATCAGTTTGATCAACATCCGAAGCACTGGCTTCCAGAAC
GTAGCCGTTCTTTTCCACGATGACCGAATCCGAAAGCGATGCAGCATCGTCACCGATCTCGACAAGTCCATCATTGACAC
AACGCCCGCAGCGGGCGATCCCGAGGGGGTGCTTCGGCGCAAGAAGAAGTACCGGGCCTCTCAGGAAAGTGGAATCGCGA
GGAAAGCGCTTCTGGATGAGTCGTTCAAAGACAATCCATGGGTTTCGCCATTCTTTGCACCGCACACCTTCGAGGTTGAT
TTCGTTGCTGCTGGAAATGCGAACAAAGTGGTTGGCATCCTCCCTGATATCTACAAGGACGCGCCAACCATCGCAATCGC
AAAGGCAGAGCTTGAGTCACCAGACATCGCCCTGTACGGCCAGCGCGTCCTGACCATGGCGGGCAACCACGGTAAAGGGT
GGTTCGCCATCTTGCTGGGGAAGAAGATCGATCCACAAACAGCCATCCCGTCGTACATCCTTGATGCCATCGCCTTCGCG
CATCCAGTAGTCACAAAGGAAGTCTGGTTCAATGTGCTGAGCTATCGCGTCAACTACATCGATGCGGAGGATCTCTTCAC
TGCATCGGCGGTCTTTGATGGATTCAGGGCTAAATTGCAGGCCTTCAGAAAGGGAGATATCGATTTCGTTGGCATCAGGA
ACGAAATGCTGGCCACCTTCCCCGACGATCGTATCAACGACGTTCTCAAGGTCTTCTAG

Upstream 100 bases:

>100_bases
TGCTAAACGTCTGCCCTGCGGAACACACCTTGTAACATGCATGTACTTTGCGGTAGGCCGGCATTCGTGCGGCGCTCCTG
GAAATAAGACGAGGGCCTCT

Downstream 100 bases:

>100_bases
CCATGTTCACGTGGGACAAGGAAGATCTGAATCCGGAGCAGGAGGCTGCCATTCTGGAGCCTGGAAGCGTTTTTCTCATC
GCATGCCCTGGCAGCGGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: ATP-Dependent Endonuclease Of OLD Family; RecF/RecN/SMC N Domain Protein; Overcoming Lysogenization Defect Protein; ATP-Dependent Endonuclease; SMC Domain Protein; SMC Protein-Like; SMC Family Protein; SMC Domain-Containing Protein; Nucleoside Triphosphate Hydrolase Domain-Containing Protein; OLD Family-Like ATP-Dependent Endonuclease; P-Loop Containing Nucleoside Triphosphate Hydrolase; P-Loop Containing Nucleoside Triphosphate Hydrolase Domain; Smc Domain Protein; Ypothetical Protein YbjD.; Endonuclease; OLD Family Nuclease

Number of amino acids: Translated: 712; Mature: 712

Protein sequence:

>712_residues
MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLESTDFHRGLGRWQGHWIIISLE
FEEISADEAVQALFRHGTGGIDDEAIGKATYNLIFRPKKEIRLRLSQLDDGDHAGLAAILNPVTLDDYETIFTGRSDADF
NDEAFYKEVVGDFEKARFNEEIEFPAIGAKIPSVLSVSKEISFTFVQALRDVVSEFHNNRTNPLLSLLKGKSGDIDPVAF
QLITDGVKALNDSIEALPDVQVVRSDISDTIKDAAGEAYSPSSLSIKSDLPDEADKLFQSLKLFVGESGEGHEGPIHELS
LGGANLIFLTLKLLEFKYQKAKQSIANFLLIEEPEAHIHTHIQKTLFDRLQYDDTQIIYSTHSTHISEVSNVQNVNILGR
ERDRCEAYQPSTGLGPEEIGNIQRYLDAVRSNLLFAKSVILVEGDAEEILIPILVKKVLGISLDELGISLINIRSTGFQN
VAVLFHDDRIRKRCSIVTDLDKSIIDTTPAAGDPEGVLRRKKKYRASQESGIARKALLDESFKDNPWVSPFFAPHTFEVD
FVAAGNANKVVGILPDIYKDAPTIAIAKAELESPDIALYGQRVLTMAGNHGKGWFAILLGKKIDPQTAIPSYILDAIAFA
HPVVTKEVWFNVLSYRVNYIDAEDLFTASAVFDGFRAKLQAFRKGDIDFVGIRNEMLATFPDDRINDVLKVF

Sequences:

>Translated_712_residues
MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLESTDFHRGLGRWQGHWIIISLE
FEEISADEAVQALFRHGTGGIDDEAIGKATYNLIFRPKKEIRLRLSQLDDGDHAGLAAILNPVTLDDYETIFTGRSDADF
NDEAFYKEVVGDFEKARFNEEIEFPAIGAKIPSVLSVSKEISFTFVQALRDVVSEFHNNRTNPLLSLLKGKSGDIDPVAF
QLITDGVKALNDSIEALPDVQVVRSDISDTIKDAAGEAYSPSSLSIKSDLPDEADKLFQSLKLFVGESGEGHEGPIHELS
LGGANLIFLTLKLLEFKYQKAKQSIANFLLIEEPEAHIHTHIQKTLFDRLQYDDTQIIYSTHSTHISEVSNVQNVNILGR
ERDRCEAYQPSTGLGPEEIGNIQRYLDAVRSNLLFAKSVILVEGDAEEILIPILVKKVLGISLDELGISLINIRSTGFQN
VAVLFHDDRIRKRCSIVTDLDKSIIDTTPAAGDPEGVLRRKKKYRASQESGIARKALLDESFKDNPWVSPFFAPHTFEVD
FVAAGNANKVVGILPDIYKDAPTIAIAKAELESPDIALYGQRVLTMAGNHGKGWFAILLGKKIDPQTAIPSYILDAIAFA
HPVVTKEVWFNVLSYRVNYIDAEDLFTASAVFDGFRAKLQAFRKGDIDFVGIRNEMLATFPDDRINDVLKVF
>Mature_712_residues
MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLESTDFHRGLGRWQGHWIIISLE
FEEISADEAVQALFRHGTGGIDDEAIGKATYNLIFRPKKEIRLRLSQLDDGDHAGLAAILNPVTLDDYETIFTGRSDADF
NDEAFYKEVVGDFEKARFNEEIEFPAIGAKIPSVLSVSKEISFTFVQALRDVVSEFHNNRTNPLLSLLKGKSGDIDPVAF
QLITDGVKALNDSIEALPDVQVVRSDISDTIKDAAGEAYSPSSLSIKSDLPDEADKLFQSLKLFVGESGEGHEGPIHELS
LGGANLIFLTLKLLEFKYQKAKQSIANFLLIEEPEAHIHTHIQKTLFDRLQYDDTQIIYSTHSTHISEVSNVQNVNILGR
ERDRCEAYQPSTGLGPEEIGNIQRYLDAVRSNLLFAKSVILVEGDAEEILIPILVKKVLGISLDELGISLINIRSTGFQN
VAVLFHDDRIRKRCSIVTDLDKSIIDTTPAAGDPEGVLRRKKKYRASQESGIARKALLDESFKDNPWVSPFFAPHTFEVD
FVAAGNANKVVGILPDIYKDAPTIAIAKAELESPDIALYGQRVLTMAGNHGKGWFAILLGKKIDPQTAIPSYILDAIAFA
HPVVTKEVWFNVLSYRVNYIDAEDLFTASAVFDGFRAKLQAFRKGDIDFVGIRNEMLATFPDDRINDVLKVF

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79274; Mature: 79274

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLES
CCCCCEEHHHCCCCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCC
TDFHRGLGRWQGHWIIISLEFEEISADEAVQALFRHGTGGIDDEAIGKATYNLIFRPKKE
CHHHHCCCCCCCCEEEEEEEHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCHH
IRLRLSQLDDGDHAGLAAILNPVTLDDYETIFTGRSDADFNDEAFYKEVVGDFEKARFNE
HHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCHHHHHCCC
EIEFPAIGAKIPSVLSVSKEISFTFVQALRDVVSEFHNNRTNPLLSLLKGKSGDIDPVAF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHH
QLITDGVKALNDSIEALPDVQVVRSDISDTIKDAAGEAYSPSSLSIKSDLPDEADKLFQS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHH
LKLFVGESGEGHEGPIHELSLGGANLIFLTLKLLEFKYQKAKQSIANFLLIEEPEAHIHT
HHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHH
HIQKTLFDRLQYDDTQIIYSTHSTHISEVSNVQNVNILGRERDRCEAYQPSTGLGPEEIG
HHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCCHHHHH
NIQRYLDAVRSNLLFAKSVILVEGDAEEILIPILVKKVLGISLDELGISLINIRSTGFQN
HHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHCCCHHHHCEEEEEEECCCCCE
VAVLFHDDRIRKRCSIVTDLDKSIIDTTPAAGDPEGVLRRKKKYRASQESGIARKALLDE
EEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHC
SFKDNPWVSPFFAPHTFEVDFVAAGNANKVVGILPDIYKDAPTIAIAKAELESPDIALYG
CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCCHHHCCCCCEEEEECCCCCCCEEEEC
QRVLTMAGNHGKGWFAILLGKKIDPQTAIPSYILDAIAFAHPVVTKEVWFNVLSYRVNYI
CEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
DAEDLFTASAVFDGFRAKLQAFRKGDIDFVGIRNEMLATFPDDRINDVLKVF
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLES
CCCCCEEHHHCCCCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCC
TDFHRGLGRWQGHWIIISLEFEEISADEAVQALFRHGTGGIDDEAIGKATYNLIFRPKKE
CHHHHCCCCCCCCEEEEEEEHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCHH
IRLRLSQLDDGDHAGLAAILNPVTLDDYETIFTGRSDADFNDEAFYKEVVGDFEKARFNE
HHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCHHHHHCCC
EIEFPAIGAKIPSVLSVSKEISFTFVQALRDVVSEFHNNRTNPLLSLLKGKSGDIDPVAF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHH
QLITDGVKALNDSIEALPDVQVVRSDISDTIKDAAGEAYSPSSLSIKSDLPDEADKLFQS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHH
LKLFVGESGEGHEGPIHELSLGGANLIFLTLKLLEFKYQKAKQSIANFLLIEEPEAHIHT
HHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHH
HIQKTLFDRLQYDDTQIIYSTHSTHISEVSNVQNVNILGRERDRCEAYQPSTGLGPEEIG
HHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCCHHHHH
NIQRYLDAVRSNLLFAKSVILVEGDAEEILIPILVKKVLGISLDELGISLINIRSTGFQN
HHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHCCCHHHHCEEEEEEECCCCCE
VAVLFHDDRIRKRCSIVTDLDKSIIDTTPAAGDPEGVLRRKKKYRASQESGIARKALLDE
EEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHC
SFKDNPWVSPFFAPHTFEVDFVAAGNANKVVGILPDIYKDAPTIAIAKAELESPDIALYG
CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCCHHHCCCCCEEEEECCCCCCCEEEEC
QRVLTMAGNHGKGWFAILLGKKIDPQTAIPSYILDAIAFAHPVVTKEVWFNVLSYRVNYI
CEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
DAEDLFTASAVFDGFRAKLQAFRKGDIDFVGIRNEMLATFPDDRINDVLKVF
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA