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The map label for this gene is nocR [H]

Identifier: 120609272

GI number: 120609272

Start: 619770

End: 620666

Strand: Reverse

Name: nocR [H]

Synonym: Aave_0571

Alternate gene names: 120609272

Gene position: 620666-619770 (Counterclockwise)

Preceding gene: 120609277

Following gene: 120609269

Centisome position: 11.6

GC content: 68.56

Gene sequence:

>897_bases
ATGAAGACCGATCTCAACTTGAGGCACATCGAAGCCTTCCGCGCGGTGATGCTCGCGGGCAGCGTCGTCGGCGCGGCGGA
ACTGTTGAACATCACCCAGCCCGCGGTGAGCCGCACGATCGCGCAGATGGAACTGCGGCTGGGCTACGCGCTGTACCAGC
GCAAGGGCCGCAGGCTCGTGCCGACAGCGGCAGCGCAGGCCCTCTTCCGCGAGGTCGAGCAGGTCTATGGTGGGATCGAG
CGCATCGCGCAGGTGGCCCAGGACCTGCGGCACCACCGCGCTGGCGCGCTGCGGATCGCGGTACTGCCGGCCCTCGCGCA
GTGGCTGGTGCCGGATGCGCTCGCGCAGTTCATGCAGGATCGGCCGCAGGTCAGAACGTTCGCGCAATCGCTCCCCTCGC
GGCAGATCGCCGAACTGGTCTCGACGCGGCAGTTCGACGCGGGCGTGATCGAGCTCCCGCTCTCGCACGCGGGCATCGAG
GTGCGGGCCTTGCCCTCGGCGCCGCTGGTGGCCGTTATTCCGCGAGGGCATCGCCTAGCGGCCTCCACGGAGCTCTCGCT
GCATGGGCTGGCCGCCGAGCGCCTGATCCTTCCTTCGCCGCACAGCTACATCCGCTACCAGATCGATGACGTCTTCAACC
GGGGGGGCATCGCCGCGCAGGTGATCGCTGAAACACCTACTTCTTCCATCGCATGCGCGCTGGCCGCTGCGGGTGCCGGC
ATCGCGCTGGTGTCGCGCTGGGTGCCCTCGCCGGTACACGATCCGCGCTACGTGGCTGTTGCCCTGCGCGAGTCGATCCG
ATCTCAGTACGGGCTCATCACGCCTTCGGGTGTGCCGGAGAACGCGCTGGTGGTCGAGTTCGCGGACCTGCTCAGCCAGC
GCATGGCGCAAGGCTGA

Upstream 100 bases:

>100_bases
GCTGCAGCACGGGAATTTCTGTGGGTTGCTCTGATCGTATGGAGAACGTCCCTTATCGGCTATTGCCATGTCGGGGGCTG
CAAATGCAGAAAGGTTATGC

Downstream 100 bases:

>100_bases
GCGTGCGCTGCGGTAAGACCTCACCGAAGATCGAACCGCTCGTACTTTCATTCGTCCGTCCCATCGGATGCCGGACCACG
GCGCGCACGCCGCGCCCGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKTDLNLRHIEAFRAVMLAGSVVGAAELLNITQPAVSRTIAQMELRLGYALYQRKGRRLVPTAAAQALFREVEQVYGGIE
RIAQVAQDLRHHRAGALRIAVLPALAQWLVPDALAQFMQDRPQVRTFAQSLPSRQIAELVSTRQFDAGVIELPLSHAGIE
VRALPSAPLVAVIPRGHRLAASTELSLHGLAAERLILPSPHSYIRYQIDDVFNRGGIAAQVIAETPTSSIACALAAAGAG
IALVSRWVPSPVHDPRYVAVALRESIRSQYGLITPSGVPENALVVEFADLLSQRMAQG

Sequences:

>Translated_298_residues
MKTDLNLRHIEAFRAVMLAGSVVGAAELLNITQPAVSRTIAQMELRLGYALYQRKGRRLVPTAAAQALFREVEQVYGGIE
RIAQVAQDLRHHRAGALRIAVLPALAQWLVPDALAQFMQDRPQVRTFAQSLPSRQIAELVSTRQFDAGVIELPLSHAGIE
VRALPSAPLVAVIPRGHRLAASTELSLHGLAAERLILPSPHSYIRYQIDDVFNRGGIAAQVIAETPTSSIACALAAAGAG
IALVSRWVPSPVHDPRYVAVALRESIRSQYGLITPSGVPENALVVEFADLLSQRMAQG
>Mature_298_residues
MKTDLNLRHIEAFRAVMLAGSVVGAAELLNITQPAVSRTIAQMELRLGYALYQRKGRRLVPTAAAQALFREVEQVYGGIE
RIAQVAQDLRHHRAGALRIAVLPALAQWLVPDALAQFMQDRPQVRTFAQSLPSRQIAELVSTRQFDAGVIELPLSHAGIE
VRALPSAPLVAVIPRGHRLAASTELSLHGLAAERLILPSPHSYIRYQIDDVFNRGGIAAQVIAETPTSSIACALAAAGAG
IALVSRWVPSPVHDPRYVAVALRESIRSQYGLITPSGVPENALVVEFADLLSQRMAQG

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=289, Percent_Identity=35.9861591695502, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=30.9734513274336, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=27.8625954198473, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693105, Length=236, Percent_Identity=24.5762711864407, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788297, Length=241, Percent_Identity=26.1410788381743, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=25.4098360655738, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788296, Length=229, Percent_Identity=27.5109170305677, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788748, Length=241, Percent_Identity=23.2365145228216, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=245, Percent_Identity=26.1224489795918, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788887, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787806, Length=244, Percent_Identity=25.8196721311475, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=22.7118644067797, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=26.9076305220884, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788481, Length=175, Percent_Identity=28, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=254, Percent_Identity=22.8346456692913, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32226; Mature: 32226

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTDLNLRHIEAFRAVMLAGSVVGAAELLNITQPAVSRTIAQMELRLGYALYQRKGRRLV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
PTAAAQALFREVEQVYGGIERIAQVAQDLRHHRAGALRIAVLPALAQWLVPDALAQFMQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
RPQVRTFAQSLPSRQIAELVSTRQFDAGVIELPLSHAGIEVRALPSAPLVAVIPRGHRLA
CHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEE
ASTELSLHGLAAERLILPSPHSYIRYQIDDVFNRGGIAAQVIAETPTSSIACALAAAGAG
CCCCHHHHHHHHCCEECCCCCHHEEEEHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCH
IALVSRWVPSPVHDPRYVAVALRESIRSQYGLITPSGVPENALVVEFADLLSQRMAQG
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTDLNLRHIEAFRAVMLAGSVVGAAELLNITQPAVSRTIAQMELRLGYALYQRKGRRLV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
PTAAAQALFREVEQVYGGIERIAQVAQDLRHHRAGALRIAVLPALAQWLVPDALAQFMQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
RPQVRTFAQSLPSRQIAELVSTRQFDAGVIELPLSHAGIEVRALPSAPLVAVIPRGHRLA
CHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEE
ASTELSLHGLAAERLILPSPHSYIRYQIDDVFNRGGIAAQVIAETPTSSIACALAAAGAG
CCCCHHHHHHHHCCEECCCCCHHEEEEHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCH
IALVSRWVPSPVHDPRYVAVALRESIRSQYGLITPSGVPENALVVEFADLLSQRMAQG
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]