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The map label for this gene is 120609226

Identifier: 120609226

GI number: 120609226

Start: 568116

End: 569777

Strand: Reverse

Name: 120609226

Synonym: Aave_0525

Alternate gene names: NA

Gene position: 569777-568116 (Counterclockwise)

Preceding gene: 120609227

Following gene: 120609224

Centisome position: 10.64

GC content: 49.46

Gene sequence:

>1662_bases
GTGTCAGCGGCCATGGTATACATCGCAACTCGATCAGCCCGCAATTCCTTTATCGTCAGCACTGAGTCAGAATCCGGCGG
CACTTGCCACAGTGAGCACGAAAGTGCGACACAATTCTTGATATTGAGCAGATGCAAGGCGCTCGGCAGAAGGTCGCGAC
ACTACTCAAACGACAGCCACATATCATCAACAACAGTTTCGGGAGGCGCAGTGAGCGATCAGGAAAAACCAAAAGTATTC
ATATCTTACAGCTGGACCAATCAGGATCACATTCAGTGGGTTGTGGACTTGGCGCATGAGCTGGGTGATGCGGGCGTCCA
CGTGTTGCTCGATAAGTTCGATCTCCGCGAGGGCGATGATTCCATCCAGTTCATGGAGAGGATTGTTAACGATCCAACGG
TTCAGAAGGTACTTCTGATTTGCGACCGAGTTTATGCAGAAAAGACGAATGCAAGGACTGGCGGCGCGGGGGTGGAAGCT
CAGATTATCTCGCCGAGAATCTATGCGAACACGGATAAGGGAAAATTCGTAGCTGTGCTATCAGAGAGAGATGCTGAAGG
CAACCCCTACCTGCCAACGTACTACGCCAGCCGGATATACATAGACCTGAGTAATCAAGACAAGTACAACGAGAATTTTG
AGTCGCTAATTCGATGGATCAACAATAAGCCGCTGTACCAGCGCCGAGCAATCGGTCAACGTCCGGCGTATCTGGACGAA
CCGGAGGAGCTCTCTCTCGGGACTGCTCCAGCATTCCGACGCGCGATTGAGGCGATGAAAAGTGGAAAGCCTTCAGCAGG
GGGCGCACTAAGTGATTACTTCCAAACGGTATCCACAAATCTCGAACGGCTTCGTCTCCATGACTCAGAATCTGAAGACT
GGGCAGATGTTTTCTTCACGAATCTAAGTTCGACAATACCCCTTCGTAACGAGCTAAATCATACATTTGAAGCCATAGCC
ACCTATGGCGTCACAAGTGAATTTGGCCCCAAAACTATCCGATTTTTTGAGTCGCTTATACCGTACTTCGATAGACCGGA
AGGGGTCAGATCATGGAATGACTCCGATTTCGACAACTTCCGGTTTCTCGGCTATGAATTTTTCATCCACGCGCTTGCTA
TCTTCATCAGCCACGAGCGGTTTGACCTGTGCAGTCTACTTTTGAATAGCGCATATTACAACGAGCGAAATAGAGAATTG
GGCAAGGAACCAATCTCCAACTTCACCGTATTCAACAATTCAGTGCAGACCCTCTCAAGGCACAACGAAGCGCAGCCTAA
GCAGTACACCTCTCCTATCGGCAAGCTTGTAAGCGAGCGGTTAGTTGGCACTCAGGTTAATCTAAGAAAGATCGTCCAAG
CTGATCTTATTGCATACATCAGAAGCGATCTAGATTCACTTAACTCAAGGAACTGGGACATGTGGTGGCCGCATATGTAC
GTTTATGGCGGTCGGCATTATGGAGCACTAGAATTATTTGCACGCGCCCAATCGATTGGATATTTTGAAAAGATAAAAGG
ACTTTTGGGAGTAAGCAATGCAGATGGCCTCGCACCGTTGATCGAGGCCCACTCCGGAGGGCAACGCGCTCCCCGCTTCA
ACTATGAGCGGGTGAATGTAGGCAGTCTGATCGGCATTGAAAAGCTTGCTTCCAGGCCATAG

Upstream 100 bases:

>100_bases
ATGTCGCAGCTGGGAGCTTCAAGAAGTATCTCTGACGCGATGAGAAGAGGACCGAGACCTCTTCATCTAGTTTGCTCATC
GTCACCTTTCCCTGAGCCGC

Downstream 100 bases:

>100_bases
GCTCGTACGGATTGCGACGAGTATTTCAGTCGGCAGCCGCAAGTCCATTATACGACTGCCGCACTTTTTGTCGGGCGTAC
GTCGTTCAACTATGCAGATT

Product: SEFIR domain-containing protein

Products: NA

Alternate protein names: SEFIR Domain Protein; Protein-Transmembrane Prediction; Sefir Domain-Containing Protein

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MSAAMVYIATRSARNSFIVSTESESGGTCHSEHESATQFLILSRCKALGRRSRHYSNDSHISSTTVSGGAVSDQEKPKVF
ISYSWTNQDHIQWVVDLAHELGDAGVHVLLDKFDLREGDDSIQFMERIVNDPTVQKVLLICDRVYAEKTNARTGGAGVEA
QIISPRIYANTDKGKFVAVLSERDAEGNPYLPTYYASRIYIDLSNQDKYNENFESLIRWINNKPLYQRRAIGQRPAYLDE
PEELSLGTAPAFRRAIEAMKSGKPSAGGALSDYFQTVSTNLERLRLHDSESEDWADVFFTNLSSTIPLRNELNHTFEAIA
TYGVTSEFGPKTIRFFESLIPYFDRPEGVRSWNDSDFDNFRFLGYEFFIHALAIFISHERFDLCSLLLNSAYYNERNREL
GKEPISNFTVFNNSVQTLSRHNEAQPKQYTSPIGKLVSERLVGTQVNLRKIVQADLIAYIRSDLDSLNSRNWDMWWPHMY
VYGGRHYGALELFARAQSIGYFEKIKGLLGVSNADGLAPLIEAHSGGQRAPRFNYERVNVGSLIGIEKLASRP

Sequences:

>Translated_553_residues
MSAAMVYIATRSARNSFIVSTESESGGTCHSEHESATQFLILSRCKALGRRSRHYSNDSHISSTTVSGGAVSDQEKPKVF
ISYSWTNQDHIQWVVDLAHELGDAGVHVLLDKFDLREGDDSIQFMERIVNDPTVQKVLLICDRVYAEKTNARTGGAGVEA
QIISPRIYANTDKGKFVAVLSERDAEGNPYLPTYYASRIYIDLSNQDKYNENFESLIRWINNKPLYQRRAIGQRPAYLDE
PEELSLGTAPAFRRAIEAMKSGKPSAGGALSDYFQTVSTNLERLRLHDSESEDWADVFFTNLSSTIPLRNELNHTFEAIA
TYGVTSEFGPKTIRFFESLIPYFDRPEGVRSWNDSDFDNFRFLGYEFFIHALAIFISHERFDLCSLLLNSAYYNERNREL
GKEPISNFTVFNNSVQTLSRHNEAQPKQYTSPIGKLVSERLVGTQVNLRKIVQADLIAYIRSDLDSLNSRNWDMWWPHMY
VYGGRHYGALELFARAQSIGYFEKIKGLLGVSNADGLAPLIEAHSGGQRAPRFNYERVNVGSLIGIEKLASRP
>Mature_552_residues
SAAMVYIATRSARNSFIVSTESESGGTCHSEHESATQFLILSRCKALGRRSRHYSNDSHISSTTVSGGAVSDQEKPKVFI
SYSWTNQDHIQWVVDLAHELGDAGVHVLLDKFDLREGDDSIQFMERIVNDPTVQKVLLICDRVYAEKTNARTGGAGVEAQ
IISPRIYANTDKGKFVAVLSERDAEGNPYLPTYYASRIYIDLSNQDKYNENFESLIRWINNKPLYQRRAIGQRPAYLDEP
EELSLGTAPAFRRAIEAMKSGKPSAGGALSDYFQTVSTNLERLRLHDSESEDWADVFFTNLSSTIPLRNELNHTFEAIAT
YGVTSEFGPKTIRFFESLIPYFDRPEGVRSWNDSDFDNFRFLGYEFFIHALAIFISHERFDLCSLLLNSAYYNERNRELG
KEPISNFTVFNNSVQTLSRHNEAQPKQYTSPIGKLVSERLVGTQVNLRKIVQADLIAYIRSDLDSLNSRNWDMWWPHMYV
YGGRHYGALELFARAQSIGYFEKIKGLLGVSNADGLAPLIEAHSGGQRAPRFNYERVNVGSLIGIEKLASRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62567; Mature: 62435

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAMVYIATRSARNSFIVSTESESGGTCHSEHESATQFLILSRCKALGRRSRHYSNDSH
CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ISSTTVSGGAVSDQEKPKVFISYSWTNQDHIQWVVDLAHELGDAGVHVLLDKFDLREGDD
CCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCH
SIQFMERIVNDPTVQKVLLICDRVYAEKTNARTGGAGVEAQIISPRIYANTDKGKFVAVL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCCEEEEE
SERDAEGNPYLPTYYASRIYIDLSNQDKYNENFESLIRWINNKPLYQRRAIGQRPAYLDE
ECCCCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCC
PEELSLGTAPAFRRAIEAMKSGKPSAGGALSDYFQTVSTNLERLRLHDSESEDWADVFFT
CHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHEECCCCCCHHHHHHHH
NLSSTIPLRNELNHTFEAIATYGVTSEFGPKTIRFFESLIPYFDRPEGVRSWNDSDFDNF
HCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
RFLGYEFFIHALAIFISHERFDLCSLLLNSAYYNERNRELGKEPISNFTVFNNSVQTLSR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEECCHHHHHHH
HNEAQPKQYTSPIGKLVSERLVGTQVNLRKIVQADLIAYIRSDLDSLNSRNWDMWWPHMY
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEE
VYGGRHYGALELFARAQSIGYFEKIKGLLGVSNADGLAPLIEAHSGGQRAPRFNYERVNV
EECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCEECC
GSLIGIEKLASRP
CHHHHHHHHHCCC
>Mature Secondary Structure 
SAAMVYIATRSARNSFIVSTESESGGTCHSEHESATQFLILSRCKALGRRSRHYSNDSH
CCEEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ISSTTVSGGAVSDQEKPKVFISYSWTNQDHIQWVVDLAHELGDAGVHVLLDKFDLREGDD
CCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCH
SIQFMERIVNDPTVQKVLLICDRVYAEKTNARTGGAGVEAQIISPRIYANTDKGKFVAVL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCCEEEEE
SERDAEGNPYLPTYYASRIYIDLSNQDKYNENFESLIRWINNKPLYQRRAIGQRPAYLDE
ECCCCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCC
PEELSLGTAPAFRRAIEAMKSGKPSAGGALSDYFQTVSTNLERLRLHDSESEDWADVFFT
CHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHEECCCCCCHHHHHHHH
NLSSTIPLRNELNHTFEAIATYGVTSEFGPKTIRFFESLIPYFDRPEGVRSWNDSDFDNF
HCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
RFLGYEFFIHALAIFISHERFDLCSLLLNSAYYNERNRELGKEPISNFTVFNNSVQTLSR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEECCHHHHHHH
HNEAQPKQYTSPIGKLVSERLVGTQVNLRKIVQADLIAYIRSDLDSLNSRNWDMWWPHMY
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEE
VYGGRHYGALELFARAQSIGYFEKIKGLLGVSNADGLAPLIEAHSGGQRAPRFNYERVNV
EECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCEECC
GSLIGIEKLASRP
CHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA