| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120609191
Identifier: 120609191
GI number: 120609191
Start: 527741
End: 529141
Strand: Reverse
Name: 120609191
Synonym: Aave_0489
Alternate gene names: NA
Gene position: 529141-527741 (Counterclockwise)
Preceding gene: 120609192
Following gene: 120609190
Centisome position: 9.89
GC content: 67.67
Gene sequence:
>1401_bases GTGGACGACATGGCATCCCCTCGCTTTGCTCCCCGCGCAGGCCTGCGCAGCCTGATCGCCATCGCCGCACTCGCCGCCCT CTGCAGCACCTCCGGTGCGCAGACGCGGATCGACGAGGACGGCATCCGCGCCAACGGCAACGTGATCGGTAGCGACGTGC TCTACAGCATCGGCGGCGGCCGCGCCGTGTCGATGAGCCCCGCGGGAAACATGCAGAGCATCGGCGTCGGCATGGGCTGG AACAGCAACCTGATCTGCGGGGACATGAGCATCACGACCACGCTGCAGAACCAGCTCAACGGCATCAGCAACGGGTTCCA GTCGATCATGACCAACGTGATCCAGTCCGCGACGAGCGCGGTCGCATCGCTGCCAGCGCTCATCATCCAGCGTGCCGATC CCGGGCTCTACAACCTGCTGACGAACGGCATCCTCCAGGCCCGGCTGGACTTCGACCGCTCCAAGATGACGTGCCGCGCG ATAGCGAGCCGCATGGCCGACATGGCGGGCGGGCAGACCGGCTGGGACCAGCTGGCCGAGGGCATGGCCCTCAAGCAGGC GGTATCCAGCACCGACGCGGTATCAGCCATCGAACGCGCCGAGGCCAACAAGGGCAACAACGGCGTTCCCTGGGTCGGCG GGAGCAGCGCGGGCGGCTCGGGCCAGTCCTCGATCAAGATCGTGGGGGACGTCACGCGTGCGGGCTACAACCTGTTGAAC GGGCGCGGCGCCACCGACACGTCTTCCATCTCGGCCAGCGACTGCAATGGGCGCCTGTCGTGCCAGACGTGGAGCTCGCC CCAGGCCGCGGCCACGTGGGCAACGAGGGTGCTGGGCGAGCGGGAGCAACGGACCTGCGAGACCTGCACGAAGACCTCGA CGACACCGGGCGTGGGCCTGACACCGCTGATCCAGGAAGAGTACGAGGCCAAGCTCAAAGCATTGCAGGAACTCGTGTCC GGGGCCAAGCCGACCACCGCGGCAAACCTGGACGCCGCCGGCAGCGCTTCGCTGCCGCTCACGCGGGGCGTCATCGAAGC GCTACGCGACGAGCCCGACCAGGACCTGCTGGGCAAGCGCCTGGCGTCTGAGGTCGCGCTCGCCTCGGTGATGGAGAAGG CCCTTCTGCTGCAGCGCACGCTGCTGACGGGCAGGAAGGAACCCAACGTCGCGGCCAACGAACTCGCGACGAAGGCCGTG GACCAGGAGAGCGGCGCACTGGAACAGGAGATCCAGAACCTGAAGACCGAGCTCGAACTGCGCCGCGAACTCGCCGGCAA CTCGCCGATGACGCTGATCCAGCGCTACAGCACGCGCGCTGCCGGCTCGCGCGGCATCTACCAGGGGGATCCAACCCGGG ACCGTGTCCAGGAGATTCAGAAACCGCGGAGCACGCAATGA
Upstream 100 bases:
>100_bases ACTACGCCTGGGCGCTCTGGCGCCCGTACAGCTGCTGCCAGCGGCGCGGCCAGGTCTTCCTCGGCAGCACCGACTTCTGA GATTTCTGACGGAGAACCCC
Downstream 100 bases:
>100_bases ACGCCAACGGCGTCAGGCGCGTGCAGCACCTGGTCAACGTCTCCGGCGGCAAGGACTCCACCGCGACCTACTTGCTCGCG CTGGAGTCCGGCCGGGACTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 466; Mature: 466
Protein sequence:
>466_residues MDDMASPRFAPRAGLRSLIAIAALAALCSTSGAQTRIDEDGIRANGNVIGSDVLYSIGGGRAVSMSPAGNMQSIGVGMGW NSNLICGDMSITTTLQNQLNGISNGFQSIMTNVIQSATSAVASLPALIIQRADPGLYNLLTNGILQARLDFDRSKMTCRA IASRMADMAGGQTGWDQLAEGMALKQAVSSTDAVSAIERAEANKGNNGVPWVGGSSAGGSGQSSIKIVGDVTRAGYNLLN GRGATDTSSISASDCNGRLSCQTWSSPQAAATWATRVLGEREQRTCETCTKTSTTPGVGLTPLIQEEYEAKLKALQELVS GAKPTTAANLDAAGSASLPLTRGVIEALRDEPDQDLLGKRLASEVALASVMEKALLLQRTLLTGRKEPNVAANELATKAV DQESGALEQEIQNLKTELELRRELAGNSPMTLIQRYSTRAAGSRGIYQGDPTRDRVQEIQKPRSTQ
Sequences:
>Translated_466_residues MDDMASPRFAPRAGLRSLIAIAALAALCSTSGAQTRIDEDGIRANGNVIGSDVLYSIGGGRAVSMSPAGNMQSIGVGMGW NSNLICGDMSITTTLQNQLNGISNGFQSIMTNVIQSATSAVASLPALIIQRADPGLYNLLTNGILQARLDFDRSKMTCRA IASRMADMAGGQTGWDQLAEGMALKQAVSSTDAVSAIERAEANKGNNGVPWVGGSSAGGSGQSSIKIVGDVTRAGYNLLN GRGATDTSSISASDCNGRLSCQTWSSPQAAATWATRVLGEREQRTCETCTKTSTTPGVGLTPLIQEEYEAKLKALQELVS GAKPTTAANLDAAGSASLPLTRGVIEALRDEPDQDLLGKRLASEVALASVMEKALLLQRTLLTGRKEPNVAANELATKAV DQESGALEQEIQNLKTELELRRELAGNSPMTLIQRYSTRAAGSRGIYQGDPTRDRVQEIQKPRSTQ >Mature_466_residues MDDMASPRFAPRAGLRSLIAIAALAALCSTSGAQTRIDEDGIRANGNVIGSDVLYSIGGGRAVSMSPAGNMQSIGVGMGW NSNLICGDMSITTTLQNQLNGISNGFQSIMTNVIQSATSAVASLPALIIQRADPGLYNLLTNGILQARLDFDRSKMTCRA IASRMADMAGGQTGWDQLAEGMALKQAVSSTDAVSAIERAEANKGNNGVPWVGGSSAGGSGQSSIKIVGDVTRAGYNLLN GRGATDTSSISASDCNGRLSCQTWSSPQAAATWATRVLGEREQRTCETCTKTSTTPGVGLTPLIQEEYEAKLKALQELVS GAKPTTAANLDAAGSASLPLTRGVIEALRDEPDQDLLGKRLASEVALASVMEKALLLQRTLLTGRKEPNVAANELATKAV DQESGALEQEIQNLKTELELRRELAGNSPMTLIQRYSTRAAGSRGIYQGDPTRDRVQEIQKPRSTQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48935; Mature: 48935
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDMASPRFAPRAGLRSLIAIAALAALCSTSGAQTRIDEDGIRANGNVIGSDVLYSIGGG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHCCCCC RAVSMSPAGNMQSIGVGMGWNSNLICGDMSITTTLQNQLNGISNGFQSIMTNVIQSATSA EEEEECCCCCCHHCCEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VASLPALIIQRADPGLYNLLTNGILQARLDFDRSKMTCRAIASRMADMAGGQTGWDQLAE HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH GMALKQAVSSTDAVSAIERAEANKGNNGVPWVGGSSAGGSGQSSIKIVGDVTRAGYNLLN HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC GRGATDTSSISASDCNGRLSCQTWSSPQAAATWATRVLGEREQRTCETCTKTSTTPGVGL CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC TPLIQEEYEAKLKALQELVSGAKPTTAANLDAAGSASLPLTRGVIEALRDEPDQDLLGKR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH LASEVALASVMEKALLLQRTLLTGRKEPNVAANELATKAVDQESGALEQEIQNLKTELEL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH RRELAGNSPMTLIQRYSTRAAGSRGIYQGDPTRDRVQEIQKPRSTQ HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCC >Mature Secondary Structure MDDMASPRFAPRAGLRSLIAIAALAALCSTSGAQTRIDEDGIRANGNVIGSDVLYSIGGG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHCCCCC RAVSMSPAGNMQSIGVGMGWNSNLICGDMSITTTLQNQLNGISNGFQSIMTNVIQSATSA EEEEECCCCCCHHCCEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VASLPALIIQRADPGLYNLLTNGILQARLDFDRSKMTCRAIASRMADMAGGQTGWDQLAE HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH GMALKQAVSSTDAVSAIERAEANKGNNGVPWVGGSSAGGSGQSSIKIVGDVTRAGYNLLN HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC GRGATDTSSISASDCNGRLSCQTWSSPQAAATWATRVLGEREQRTCETCTKTSTTPGVGL CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC TPLIQEEYEAKLKALQELVSGAKPTTAANLDAAGSASLPLTRGVIEALRDEPDQDLLGKR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH LASEVALASVMEKALLLQRTLLTGRKEPNVAANELATKAVDQESGALEQEIQNLKTELEL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH RRELAGNSPMTLIQRYSTRAAGSRGIYQGDPTRDRVQEIQKPRSTQ HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA