| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120609183
Identifier: 120609183
GI number: 120609183
Start: 515166
End: 516863
Strand: Reverse
Name: 120609183
Synonym: Aave_0480
Alternate gene names: NA
Gene position: 516863-515166 (Counterclockwise)
Preceding gene: 120609188
Following gene: 120609182
Centisome position: 9.66
GC content: 71.38
Gene sequence:
>1698_bases ATGAGTGCCATCAAGAAAGCCTTCCAGGCGATAGGGAAGGGAATCGAAAAAGCCGTCCATAGCGTCGGCCAGATCGCCAA GGGAATCGTCACGCTGAACCTGAAGGCCGCGGCCGAAGGTCTCAAGGGCCTGGCCGACGCCACCATGACCATGGCGCGCG GCGCCATGAACCTCATGCCGGCGGCGATGGCGGCCAACACGCTGCTCGACGGCGCGCTCGACAAGATGCTGCGCAAGGTG CAGAACAGCGCGCAGAAGCTGGCCGACTCCGTCGTGGACAGCGTGGAAGGGGGCCTCTCCAACATCAAGGACGGCGTGGT CAACACGGCCAAGGGCATCGCCAGGGGCAACTTCTCCAAGGCCTTCAAGGGACTGACGCAGCTGGCCATGGGGGTGGTGG ACACGGCGTCCAACTTCGGCCCCGGCGGCGTGGCCAAGAACATGGCACGCATGGCCGTGGACGCCGCCATCGGGCTGGCC GGGCAGGAGGCCACCAAGCTCGCCGCCAAGGTGCTGGATCCGCACGGAACCTCCCGCTTCGGAGCGCTGGCCACCGACAT GGTGGGCGCGGCGGTGGGCGGCGGCCTGGGCGGATCGCGTGCCGGCCGCTTCGCGGGCTGCGGCACGGGTGCCACGGGCA TGCTGCAGGGCGCCAAACACGCCGTGCAGGACACCGCCCGCACGGCCGCCCTCGGCTTCGCGCAGGAACAGGTGTCCACG CTCACGCTGAAGGTGCAGATGACCCTGGACCCCGACGGCGACTCGCGCGCCGGCGAAGCAGGGGCGAACGCCTTCGACAG CGCGGCGAACGCCGCCCTCTTCCAGGCCACTGCCGGCCGCCGCCGCGCCGACGGCACGCGTGCCACGGCCGGCGAGCATT TGCGCGGCGTGCAGGGCGCCGCCACGGACGCCGCGCTCAACAGCCTGAACTTCTCGGCGCAGACCGCCGTCCAGGGCGCG ATCTACGAGCAACTGTCGCCGCTGGGTGCAGGCACGGGCACGGGCCTGGGCTCGAGCCTGGGCGCCATCGGCACCGACGC CGCCGCGGGCGTGGCCGGCGCCGCGGTGAACCATGCCTTCACGGGCCGCCAGCGCGGCCTGGACGGCGCGGTGCAGCCGA TGGCACCGTCCACCGCCCTGGCCGCCACCAAGGGCGCCATCCTGCTCGCCGTGGACCAGTTCGTGCAGCAGGTGATCGCG CGCACCATCCTGGAAGCCATCCAGAGCACGCTCGGCCAACTGGACGCAGCGTCGCTCAAGGGCTTCGCGTCGCTGTCGGA AGCACCGGATACCACCGATGCCCCCACCGGACAGGGCCCGGCGGAAATGGCGCGCCGCGCTGCCGCGCACATCCGCCAGC AGATGGGCCTGTCCATCGAGATGGCCATCGACCAGGCCACCCGCCAGGCCACCGAAGCCATCGGGCAGCGCCTGCTGCAG GGCCTGGCGGGCGGCGGCAACAACGCCCGCGCCCTGGGAGGCGACCTGGCGGCCATCACTCGCAACGCGGCGATGCAGCC CATCGAGCAGGCCTCGCGCAGCGTCTTCGACGCGGTGCAGGGCGCCATCGGCGTGGCCGCGCGCCAGACCGTGGAGCAGG GCCTCGCCGACAAGCTCCCGCTGGGCGGCAGCTCCACTGCGGCAACGCTGCAGGTGCAGATAGAAGCCCAGATCAGCCAC TACCAGATCCGGGCCTGA
Upstream 100 bases:
>100_bases TAGCCGCGTTGGTCCACCGATCCACGATTCCCCCTCCGATGGTGAAAGTGCCTGGTGCACCGGTGCTTTTTTCCACGTCA ACCACTAGGAGCCACTACCG
Downstream 100 bases:
>100_bases CGCGGCCCGCCGCCGGGCGCGGCGGCCCTTGTACGCCCCGCCCGGCCCCCATCCACTTCCTTTGCAAAGGCACGCCAAGC CATGGACGAAACCCAACTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 565; Mature: 564
Protein sequence:
>565_residues MSAIKKAFQAIGKGIEKAVHSVGQIAKGIVTLNLKAAAEGLKGLADATMTMARGAMNLMPAAMAANTLLDGALDKMLRKV QNSAQKLADSVVDSVEGGLSNIKDGVVNTAKGIARGNFSKAFKGLTQLAMGVVDTASNFGPGGVAKNMARMAVDAAIGLA GQEATKLAAKVLDPHGTSRFGALATDMVGAAVGGGLGGSRAGRFAGCGTGATGMLQGAKHAVQDTARTAALGFAQEQVST LTLKVQMTLDPDGDSRAGEAGANAFDSAANAALFQATAGRRRADGTRATAGEHLRGVQGAATDAALNSLNFSAQTAVQGA IYEQLSPLGAGTGTGLGSSLGAIGTDAAAGVAGAAVNHAFTGRQRGLDGAVQPMAPSTALAATKGAILLAVDQFVQQVIA RTILEAIQSTLGQLDAASLKGFASLSEAPDTTDAPTGQGPAEMARRAAAHIRQQMGLSIEMAIDQATRQATEAIGQRLLQ GLAGGGNNARALGGDLAAITRNAAMQPIEQASRSVFDAVQGAIGVAARQTVEQGLADKLPLGGSSTAATLQVQIEAQISH YQIRA
Sequences:
>Translated_565_residues MSAIKKAFQAIGKGIEKAVHSVGQIAKGIVTLNLKAAAEGLKGLADATMTMARGAMNLMPAAMAANTLLDGALDKMLRKV QNSAQKLADSVVDSVEGGLSNIKDGVVNTAKGIARGNFSKAFKGLTQLAMGVVDTASNFGPGGVAKNMARMAVDAAIGLA GQEATKLAAKVLDPHGTSRFGALATDMVGAAVGGGLGGSRAGRFAGCGTGATGMLQGAKHAVQDTARTAALGFAQEQVST LTLKVQMTLDPDGDSRAGEAGANAFDSAANAALFQATAGRRRADGTRATAGEHLRGVQGAATDAALNSLNFSAQTAVQGA IYEQLSPLGAGTGTGLGSSLGAIGTDAAAGVAGAAVNHAFTGRQRGLDGAVQPMAPSTALAATKGAILLAVDQFVQQVIA RTILEAIQSTLGQLDAASLKGFASLSEAPDTTDAPTGQGPAEMARRAAAHIRQQMGLSIEMAIDQATRQATEAIGQRLLQ GLAGGGNNARALGGDLAAITRNAAMQPIEQASRSVFDAVQGAIGVAARQTVEQGLADKLPLGGSSTAATLQVQIEAQISH YQIRA >Mature_564_residues SAIKKAFQAIGKGIEKAVHSVGQIAKGIVTLNLKAAAEGLKGLADATMTMARGAMNLMPAAMAANTLLDGALDKMLRKVQ NSAQKLADSVVDSVEGGLSNIKDGVVNTAKGIARGNFSKAFKGLTQLAMGVVDTASNFGPGGVAKNMARMAVDAAIGLAG QEATKLAAKVLDPHGTSRFGALATDMVGAAVGGGLGGSRAGRFAGCGTGATGMLQGAKHAVQDTARTAALGFAQEQVSTL TLKVQMTLDPDGDSRAGEAGANAFDSAANAALFQATAGRRRADGTRATAGEHLRGVQGAATDAALNSLNFSAQTAVQGAI YEQLSPLGAGTGTGLGSSLGAIGTDAAAGVAGAAVNHAFTGRQRGLDGAVQPMAPSTALAATKGAILLAVDQFVQQVIAR TILEAIQSTLGQLDAASLKGFASLSEAPDTTDAPTGQGPAEMARRAAAHIRQQMGLSIEMAIDQATRQATEAIGQRLLQG LAGGGNNARALGGDLAAITRNAAMQPIEQASRSVFDAVQGAIGVAARQTVEQGLADKLPLGGSSTAATLQVQIEAQISHY QIRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56553; Mature: 56422
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAIKKAFQAIGKGIEKAVHSVGQIAKGIVTLNLKAAAEGLKGLADATMTMARGAMNLMP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH AAMAANTLLDGALDKMLRKVQNSAQKLADSVVDSVEGGLSNIKDGVVNTAKGIARGNFSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHH AFKGLTQLAMGVVDTASNFGPGGVAKNMARMAVDAAIGLAGQEATKLAAKVLDPHGTSRF HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHH GALATDMVGAAVGGGLGGSRAGRFAGCGTGATGMLQGAKHAVQDTARTAALGFAQEQVST HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE LTLKVQMTLDPDGDSRAGEAGANAFDSAANAALFQATAGRRRADGTRATAGEHLRGVQGA EEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCC ATDAALNSLNFSAQTAVQGAIYEQLSPLGAGTGTGLGSSLGAIGTDAAAGVAGAAVNHAF HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHH TGRQRGLDGAVQPMAPSTALAATKGAILLAVDQFVQQVIARTILEAIQSTLGQLDAASLK HCHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH GFASLSEAPDTTDAPTGQGPAEMARRAAAHIRQQMGLSIEMAIDQATRQATEAIGQRLLQ HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHH GLAGGGNNARALGGDLAAITRNAAMQPIEQASRSVFDAVQGAIGVAARQTVEQGLADKLP HHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LGGSSTAATLQVQIEAQISHYQIRA CCCCCCCEEEEEEEEEEECCEEECC >Mature Secondary Structure SAIKKAFQAIGKGIEKAVHSVGQIAKGIVTLNLKAAAEGLKGLADATMTMARGAMNLMP HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH AAMAANTLLDGALDKMLRKVQNSAQKLADSVVDSVEGGLSNIKDGVVNTAKGIARGNFSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHH AFKGLTQLAMGVVDTASNFGPGGVAKNMARMAVDAAIGLAGQEATKLAAKVLDPHGTSRF HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHH GALATDMVGAAVGGGLGGSRAGRFAGCGTGATGMLQGAKHAVQDTARTAALGFAQEQVST HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE LTLKVQMTLDPDGDSRAGEAGANAFDSAANAALFQATAGRRRADGTRATAGEHLRGVQGA EEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCC ATDAALNSLNFSAQTAVQGAIYEQLSPLGAGTGTGLGSSLGAIGTDAAAGVAGAAVNHAF HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHH TGRQRGLDGAVQPMAPSTALAATKGAILLAVDQFVQQVIARTILEAIQSTLGQLDAASLK HCHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH GFASLSEAPDTTDAPTGQGPAEMARRAAAHIRQQMGLSIEMAIDQATRQATEAIGQRLLQ HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHH GLAGGGNNARALGGDLAAITRNAAMQPIEQASRSVFDAVQGAIGVAARQTVEQGLADKLP HHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LGGSSTAATLQVQIEAQISHYQIRA CCCCCCCEEEEEEEEEEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA