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The map label for this gene is yfdE [H]

Identifier: 120608886

GI number: 120608886

Start: 197994

End: 199292

Strand: Reverse

Name: yfdE [H]

Synonym: Aave_0178

Alternate gene names: 120608886

Gene position: 199292-197994 (Counterclockwise)

Preceding gene: 120608887

Following gene: 120608885

Centisome position: 3.72

GC content: 71.52

Gene sequence:

>1299_bases
ATGGGCGACGTTGCCGAACGGACCTGTTCAACGGAACACGAGATGACAGAAGCTTCTTCTTTCGCTGCCTCCCCACCACG
CACCGGCCCGCTGGCGGGGGTGCGGGTGCTCGATCTCACCTCGGTGATCATGGGGCCGTTCGCCACGCAGATCCTCGCGC
AGCTGGGTGCGGAGGTGGTGAAGGTGGAGACGCCCGAGGGGGACAACATGCGGCACGTGGGACCGATGCGGCACGCGGGC
ATGGGGCACATCTTTCTGCATGCGAACGCGGGCAAGCAGAGCATCGCGCTGGACCTGAAGCACCCGGACGGGCGCGAGGC
GGCGCTGCGGCTGGCCGAGGGCTGCGACGTGCTCATCAGCAATGTGCGGCCGCAGGCGCTGGCCCGGCTGGGGCTGGATC
ACGGGGCGGTGAGCGCGCGCAATCCCCGCATCATCCACGTGAGCTGCTGCGGCTTCGACCAGGACGGGCCGGACGCCGCG
CGTCCTGCCTACGACGACCTGATCCAGGGCGCCACCGGCATTCCCTGGCTCATGCAGCGCTACGGCGCGCCGGAGCCGTC
GTATGCGCCCACCACGCTGTCGGACCGGGTGACCGGGCTGCACGCGGTGTATGCCGTGACGGCGGCGCTCTACGCCCGCG
AGAAGACGGGACGGGGCCAGGCCGTGGTCGTGCCGATGTTCGAGGCCATGGCGCAGTTCGTGCTGGGCGACCACATGGCG
GGCCTCACCTTCGAGCCGCCGCTGGGCGAACCCGGCTACGCGCGCCTGCTCACGGCCCACCGCAAGCCCTACGCCACGGC
CGACGGCATGCTCTGCGTGCTGATCTACAACGACAAGCACTGGCGAAGCTTTTTCGCGGCGATCGGCGAGGACGGCGATG
GAGGCCTGGCGCACGACCCGCGCTTCGCCACGCATGGCGCGCGCGCCGCGCACATCGACGCCGTGTATGCCGAGGTGGCG
CGCATCCTGCGCACGCGCACCACGGCCGCATGGCGGGCGGTGCTGGACGCGGCCGACGTGCCCAACATGCCCATGAATTC
CCCGGCCGACCTGCTCGGCAACGCGCAACTGCGCGCGACCGGCTTCCTGCACGACACGGAGCATCCCAGCGAGGGACCGA
TGCACGCCATGGCGCACCCCACGCGCTGGTCCGCCACGCCCCCGGCGCGCGACCTGCCCCCTGCGCCGCGCCTGGGCGAA
CACACGCGCAGCCTGCTGGCCGGGGCCGGCTACACGCCCGCGCAGATCGACGCCCTTCTGGCGCAGGGCGCGTGCCTCGC
TGCCGGAGACACCGCATGA

Upstream 100 bases:

>100_bases
TCCGCGCTCGGCCATCAGCCTCCCATCACACGCATTCCGGGTGTGAACAACCTCGTGAGACTCAACAGCTAGTGCAAAAG
CCGTGGGCTCGGGCATAGGC

Downstream 100 bases:

>100_bases
CCCCCACCACGACAGTCCCCACGACGACCGCCATGACCACTCCCGACGCCCCCTCCCGCTACCTGGTGCGCGCCGCCCAG
GTGCCCGGCTACCAGCCCGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MGDVAERTCSTEHEMTEASSFAASPPRTGPLAGVRVLDLTSVIMGPFATQILAQLGAEVVKVETPEGDNMRHVGPMRHAG
MGHIFLHANAGKQSIALDLKHPDGREAALRLAEGCDVLISNVRPQALARLGLDHGAVSARNPRIIHVSCCGFDQDGPDAA
RPAYDDLIQGATGIPWLMQRYGAPEPSYAPTTLSDRVTGLHAVYAVTAALYAREKTGRGQAVVVPMFEAMAQFVLGDHMA
GLTFEPPLGEPGYARLLTAHRKPYATADGMLCVLIYNDKHWRSFFAAIGEDGDGGLAHDPRFATHGARAAHIDAVYAEVA
RILRTRTTAAWRAVLDAADVPNMPMNSPADLLGNAQLRATGFLHDTEHPSEGPMHAMAHPTRWSATPPARDLPPAPRLGE
HTRSLLAGAGYTPAQIDALLAQGACLAAGDTA

Sequences:

>Translated_432_residues
MGDVAERTCSTEHEMTEASSFAASPPRTGPLAGVRVLDLTSVIMGPFATQILAQLGAEVVKVETPEGDNMRHVGPMRHAG
MGHIFLHANAGKQSIALDLKHPDGREAALRLAEGCDVLISNVRPQALARLGLDHGAVSARNPRIIHVSCCGFDQDGPDAA
RPAYDDLIQGATGIPWLMQRYGAPEPSYAPTTLSDRVTGLHAVYAVTAALYAREKTGRGQAVVVPMFEAMAQFVLGDHMA
GLTFEPPLGEPGYARLLTAHRKPYATADGMLCVLIYNDKHWRSFFAAIGEDGDGGLAHDPRFATHGARAAHIDAVYAEVA
RILRTRTTAAWRAVLDAADVPNMPMNSPADLLGNAQLRATGFLHDTEHPSEGPMHAMAHPTRWSATPPARDLPPAPRLGE
HTRSLLAGAGYTPAQIDALLAQGACLAAGDTA
>Mature_431_residues
GDVAERTCSTEHEMTEASSFAASPPRTGPLAGVRVLDLTSVIMGPFATQILAQLGAEVVKVETPEGDNMRHVGPMRHAGM
GHIFLHANAGKQSIALDLKHPDGREAALRLAEGCDVLISNVRPQALARLGLDHGAVSARNPRIIHVSCCGFDQDGPDAAR
PAYDDLIQGATGIPWLMQRYGAPEPSYAPTTLSDRVTGLHAVYAVTAALYAREKTGRGQAVVVPMFEAMAQFVLGDHMAG
LTFEPPLGEPGYARLLTAHRKPYATADGMLCVLIYNDKHWRSFFAAIGEDGDGGLAHDPRFATHGARAAHIDAVYAEVAR
ILRTRTTAAWRAVLDAADVPNMPMNSPADLLGNAQLRATGFLHDTEHPSEGPMHAMAHPTRWSATPPARDLPPAPRLGEH
TRSLLAGAGYTPAQIDALLAQGACLAAGDTA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=407, Percent_Identity=30.4668304668305, Blast_Score=162, Evalue=5e-40,
Organism=Homo sapiens, GI300863124, Length=433, Percent_Identity=28.8683602771363, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI300863126, Length=404, Percent_Identity=27.4752475247525, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI13376042, Length=433, Percent_Identity=26.3279445727483, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI42794625, Length=398, Percent_Identity=25.8793969849246, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI266456254, Length=398, Percent_Identity=25.8793969849246, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI266458397, Length=247, Percent_Identity=29.9595141700405, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI266458393, Length=247, Percent_Identity=29.9595141700405, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI42822893, Length=126, Percent_Identity=32.5396825396825, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI266458395, Length=126, Percent_Identity=32.5396825396825, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI87082093, Length=380, Percent_Identity=30.5263157894737, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI1788717, Length=413, Percent_Identity=30.7506053268765, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1786222, Length=272, Percent_Identity=30.1470588235294, Blast_Score=96, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=31.6455696202532, Blast_Score=175, Evalue=4e-44,
Organism=Drosophila melanogaster, GI24585488, Length=204, Percent_Identity=31.8627450980392, Blast_Score=93, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45885; Mature: 45753

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDVAERTCSTEHEMTEASSFAASPPRTGPLAGVRVLDLTSVIMGPFATQILAQLGAEVV
CCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
KVETPEGDNMRHVGPMRHAGMGHIFLHANAGKQSIALDLKHPDGREAALRLAEGCDVLIS
EEECCCCCCCCCCCCHHHCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCHHHHHH
NVRPQALARLGLDHGAVSARNPRIIHVSCCGFDQDGPDAARPAYDDLIQGATGIPWLMQR
CCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHHHHH
YGAPEPSYAPTTLSDRVTGLHAVYAVTAALYAREKTGRGQAVVVPMFEAMAQFVLGDHMA
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCC
GLTFEPPLGEPGYARLLTAHRKPYATADGMLCVLIYNDKHWRSFFAAIGEDGDGGLAHDP
CCEECCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCC
RFATHGARAAHIDAVYAEVARILRTRTTAAWRAVLDAADVPNMPMNSPADLLGNAQLRAT
CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEE
GFLHDTEHPSEGPMHAMAHPTRWSATPPARDLPPAPRLGEHTRSLLAGAGYTPAQIDALL
ECEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
AQGACLAAGDTA
HCCCEEECCCCC
>Mature Secondary Structure 
GDVAERTCSTEHEMTEASSFAASPPRTGPLAGVRVLDLTSVIMGPFATQILAQLGAEVV
CCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
KVETPEGDNMRHVGPMRHAGMGHIFLHANAGKQSIALDLKHPDGREAALRLAEGCDVLIS
EEECCCCCCCCCCCCHHHCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCHHHHHH
NVRPQALARLGLDHGAVSARNPRIIHVSCCGFDQDGPDAARPAYDDLIQGATGIPWLMQR
CCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHHHHH
YGAPEPSYAPTTLSDRVTGLHAVYAVTAALYAREKTGRGQAVVVPMFEAMAQFVLGDHMA
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCC
GLTFEPPLGEPGYARLLTAHRKPYATADGMLCVLIYNDKHWRSFFAAIGEDGDGGLAHDP
CCEECCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCC
RFATHGARAAHIDAVYAEVARILRTRTTAAWRAVLDAADVPNMPMNSPADLLGNAQLRAT
CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEE
GFLHDTEHPSEGPMHAMAHPTRWSATPPARDLPPAPRLGEHTRSLLAGAGYTPAQIDALL
ECEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
AQGACLAAGDTA
HCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]