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The map label for this gene is yrdA [H]

Identifier: 120608815

GI number: 120608815

Start: 113788

End: 114351

Strand: Reverse

Name: yrdA [H]

Synonym: Aave_0106

Alternate gene names: 120608815

Gene position: 114351-113788 (Counterclockwise)

Preceding gene: 120608816

Following gene: 120608814

Centisome position: 2.14

GC content: 69.68

Gene sequence:

>564_bases
ATGCCTCTTTCCCCCTACCTCGACGCCACGCCCACGATGGACGAAGGCGTGTTCATCCATGCCTCCGCCCAGGTGATCGG
CGACGTGCACCTGGGGCGGGACGCGTCCGTCTGGTGCAACGCCGTGCTGCGCGGCGACGTGCACCGCATCACCGTGGGCG
AGGGCTCCAACGTGCAGGACCTGAGCATGGGCCACGTGTCCCACCGCCACGCGGGCAAGCCGGACGGCTCGCCCCTGGTC
ATCGGCAGCCACGTGACCATCGGACATTCGGCCATCCTGCACGGCTGCCGCATCGGCGACGAATGCCTCATCGGCATGGG
CAGCATCGTGATGGACGATGCGGTCATCGGCGACCAGGTGATGCTCGGCGCCGGCAGCCTGGTGCCGCCGGGCAAGGTGC
TGGAGCGCGGCTCGCTCTACATCGGCCGGCCCGCCGTGCGCCAGCGCGCGCTGACGCCGCAGGAGATCGCATACCTGCGC
TATTCGGCCGAGCACTACGTCCGGGTCAAGAACAACTATCTCGCCACGCCGCAGCCGCCGCTGCCGGCCGCCCTGCCGGG
ATAA

Upstream 100 bases:

>100_bases
TTCTGCCGGAAACCTGAGCCCCGGGGCTGCGGCGCGGCGCGGCGTGCCTTACGCTCCGGGGTCACGCCTCTTCGTTTTCC
GGCCCCGGCCGCTTTCCGCC

Downstream 100 bases:

>100_bases
TCGGGGGCCGCCTCCCCACGCCTTCCATGCCCGATTCCGCCTGCCGCGTGCTGGCCGTCATCCCGCCGATGACGCAGCTC
AACACGCCCTACCCCTCCAC

Product: carbonic anhydrase family 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MPLSPYLDATPTMDEGVFIHASAQVIGDVHLGRDASVWCNAVLRGDVHRITVGEGSNVQDLSMGHVSHRHAGKPDGSPLV
IGSHVTIGHSAILHGCRIGDECLIGMGSIVMDDAVIGDQVMLGAGSLVPPGKVLERGSLYIGRPAVRQRALTPQEIAYLR
YSAEHYVRVKNNYLATPQPPLPAALPG

Sequences:

>Translated_187_residues
MPLSPYLDATPTMDEGVFIHASAQVIGDVHLGRDASVWCNAVLRGDVHRITVGEGSNVQDLSMGHVSHRHAGKPDGSPLV
IGSHVTIGHSAILHGCRIGDECLIGMGSIVMDDAVIGDQVMLGAGSLVPPGKVLERGSLYIGRPAVRQRALTPQEIAYLR
YSAEHYVRVKNNYLATPQPPLPAALPG
>Mature_186_residues
PLSPYLDATPTMDEGVFIHASAQVIGDVHLGRDASVWCNAVLRGDVHRITVGEGSNVQDLSMGHVSHRHAGKPDGSPLVI
GSHVTIGHSAILHGCRIGDECLIGMGSIVMDDAVIGDQVMLGAGSLVPPGKVLERGSLYIGRPAVRQRALTPQEIAYLRY
SAEHYVRVKNNYLATPQPPLPAALPG

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=172, Percent_Identity=51.1627906976744, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI1787667, Length=166, Percent_Identity=40.3614457831325, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI87081681, Length=166, Percent_Identity=36.144578313253, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19823; Mature: 19692

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSPYLDATPTMDEGVFIHASAQVIGDVHLGRDASVWCNAVLRGDVHRITVGEGSNVQD
CCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCC
LSMGHVSHRHAGKPDGSPLVIGSHVTIGHSAILHGCRIGDECLIGMGSIVMDDAVIGDQV
CCCCCCHHCCCCCCCCCEEEEECCEEECHHHHHHHCCCCCHHHEECCCHHCCCCCCCCEE
MLGAGSLVPPGKVLERGSLYIGRPAVRQRALTPQEIAYLRYSAEHYVRVKNNYLATPQPP
EECCCCCCCCHHHHHCCCEEECCHHHHHHCCCHHHHHEEEECCCEEEEECCCEECCCCCC
LPAALPG
CCCCCCC
>Mature Secondary Structure 
PLSPYLDATPTMDEGVFIHASAQVIGDVHLGRDASVWCNAVLRGDVHRITVGEGSNVQD
CCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCC
LSMGHVSHRHAGKPDGSPLVIGSHVTIGHSAILHGCRIGDECLIGMGSIVMDDAVIGDQV
CCCCCCHHCCCCCCCCCEEEEECCEEECHHHHHHHCCCCCHHHEECCCHHCCCCCCCCEE
MLGAGSLVPPGKVLERGSLYIGRPAVRQRALTPQEIAYLRYSAEHYVRVKNNYLATPQPP
EECCCCCCCCHHHHHCCCEEECCHHHHHHCCCHHHHHEEEECCCEEEEECCCEECCCCCC
LPAALPG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]