| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599319
Identifier: 120599319
GI number: 120599319
Start: 2878174
End: 2878698
Strand: Direct
Name: 120599319
Synonym: Sputw3181_2515
Alternate gene names: NA
Gene position: 2878174-2878698 (Clockwise)
Preceding gene: 120599318
Following gene: 120599320
Centisome position: 61.13
GC content: 43.62
Gene sequence:
>525_bases ATGAGTTACTACAAAATTACCAATGAAACAGCAGTGCAAGCATTCAAAGCCTTTGATGCAGCTAAAGCAAACTTGATTGA GCAAGCGACTAAATTAGCCGACCACTTTGGTGGCAAACCTATTTTTAGCAATCGCGTTGAAAGTATTTCGTGTGCTGGCA TTAACTTTCACAACTTCAACCAGCTTGAAAACAATCATTTATGGTTCAAGCCTAAAGCGGCGAATTGCTTTGCTTCATCA CCCAAATGCGGCAAGCCGAAAGCGGCAGATCGTGAAGCGTTAGAAGCTATCAGAGCTAAATACAATGCCATGATGCCAGT AGAAGTTTCACGCATACCTTTACTAGAAGCGATTGGTACAAATTGGGGTGACTGCTTATTCGCCCCGCTTTCGCTGTTCC TGCACGATGACGTTATTTACCTCGATACCCGCCTTAGTCTTATCGATGCGACCGAGATATTTGGCAGCGAATATGAAGCC GTAAAAAGTGCTTATCAAGCCGCAAAAGTTGAGGTGAAAGCATGA
Upstream 100 bases:
>100_bases CAAGACCAAGAAAGAAATTATCTCTTGGCAAGTCTACAACGGCGAAATCGCCGCGTAACGCAACCCTAAGTGCAGTAAAA ACAGAGCAGAGAGAATCGAT
Downstream 100 bases:
>100_bases GCCAACGTATCGAATGCAGTCGCCGCACCTGCCGCTGGACTGGTACAAAATCACAGTTAGAAGAAGTGTATGCAACAAAT GGATTTTATAACTGCGTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MSYYKITNETAVQAFKAFDAAKANLIEQATKLADHFGGKPIFSNRVESISCAGINFHNFNQLENNHLWFKPKAANCFASS PKCGKPKAADREALEAIRAKYNAMMPVEVSRIPLLEAIGTNWGDCLFAPLSLFLHDDVIYLDTRLSLIDATEIFGSEYEA VKSAYQAAKVEVKA
Sequences:
>Translated_174_residues MSYYKITNETAVQAFKAFDAAKANLIEQATKLADHFGGKPIFSNRVESISCAGINFHNFNQLENNHLWFKPKAANCFASS PKCGKPKAADREALEAIRAKYNAMMPVEVSRIPLLEAIGTNWGDCLFAPLSLFLHDDVIYLDTRLSLIDATEIFGSEYEA VKSAYQAAKVEVKA >Mature_173_residues SYYKITNETAVQAFKAFDAAKANLIEQATKLADHFGGKPIFSNRVESISCAGINFHNFNQLENNHLWFKPKAANCFASSP KCGKPKAADREALEAIRAKYNAMMPVEVSRIPLLEAIGTNWGDCLFAPLSLFLHDDVIYLDTRLSLIDATEIFGSEYEAV KSAYQAAKVEVKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19270; Mature: 19139
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYYKITNETAVQAFKAFDAAKANLIEQATKLADHFGGKPIFSNRVESISCAGINFHNFN CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCC QLENNHLWFKPKAANCFASSPKCGKPKAADREALEAIRAKYNAMMPVEVSRIPLLEAIGT CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHCC NWGDCLFAPLSLFLHDDVIYLDTRLSLIDATEIFGSEYEAVKSAYQAAKVEVKA CCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHEEECC >Mature Secondary Structure SYYKITNETAVQAFKAFDAAKANLIEQATKLADHFGGKPIFSNRVESISCAGINFHNFN CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCC QLENNHLWFKPKAANCFASSPKCGKPKAADREALEAIRAKYNAMMPVEVSRIPLLEAIGT CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHCC NWGDCLFAPLSLFLHDDVIYLDTRLSLIDATEIFGSEYEAVKSAYQAAKVEVKA CCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA