| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120599228
Identifier: 120599228
GI number: 120599228
Start: 2796627
End: 2797946
Strand: Direct
Name: 120599228
Synonym: Sputw3181_2424
Alternate gene names: NA
Gene position: 2796627-2797946 (Clockwise)
Preceding gene: 120599226
Following gene: 120599230
Centisome position: 59.4
GC content: 45.0
Gene sequence:
>1320_bases ATGAATGCAGTCGTAATTGCAGTGTGTTTAATGTTGGCACTCAGTTTGTTTAGAGTGAATGTGGTGATCGCTCTGACCGT TAGCGCCCTTGTTGCAGGGTTGATTGGCGGTATGGATCTTCATCAAACCATAGACGCCTTTAATACCGGTTTAGGTGGCG GCGCACAAATTGCGCTCAGTTATGCATTATTAGGTGCCTTTGCCGTCGCACTATCGCACTCAGGATTAACGGCACTTATC TCTAAATCTATTATCAGCAGTTTAGGCAAAGAGCCTAATGCCACAAACACTCATTGGGTCCGTTGGTTACTGCTATTGTC GCTGCTTGCTATGTCGATGGCCTCACAAAATATTTTGCCAATCCACATTGCTTTTATTCCAATCCTCGTACCGCCACTAT TACATGTGATGTCCAAACTGAACATTGACCGTCGTCTAGTCGCTTGTGTGCTTACGTTTGGGCTTGTCACCACCTATATG ATTTTGCCAATTGGTTTTGGGGGAATTTTTTTAAATGATATTTTGCTATCAAACCTTACCAGTAATGGCTTAGTCGCCGT GCGGGATCAAATTCCTCCTGCCATGTTAATCCCTGCTGCGGGTATGGTAGTAGGCTTACTGACGGCTGTATTTATCAGTT ACCGTAAACCTCGGATATATGAAGATGCTAAAGCGGTCATGGCGGCACCAGAAGAAAGCCTTAATAAACGTAATATCGTT ATCGCTGCGTTAGCAATTCTTGCGACGTTGTTTGTACAACTTGAAACCGACTCAATGATCTTCGGTGCCTTAGTCGGTTT TATGATTTTCAGTTTTTCAGGTGCATTAAAACACGTTGCCGACCAAGATATCTTCAATCAAGGCGTGCGCATGATGGCCA ACATCGGCTTTATTATGATTTCTGCCGCAGGCTTTGCTGCCGTAGTAAAAGAAACGGGAGAAGTCGGTACACTTGTTGCG TCACTTGGCGAGATGATTGGTGACAATAAAGCCCTTGCTGCTTTTTTGATGCTCGTTGTCGGTTTGCTGATCACGATGGG AATAGGTTCATCCTTCTCGACTATTCCTATTATTGCGACTATTTACGTGCCTCTCGCATTAAGTTTTGGTTTTTCTGTAG CGGCAACGATTGCATTAGTTGGTACAGCGGCAGCATTAGGTGATGCGGGATCGCCTGCGTCAGATTCCACCTTGGGCCCC ACAGCAGGTTTAAATGCCGACGGCCAACACGATCATATACGTGATAGCGTAATCCCAACCTTTATTCACTACAATATTCC GTTGTTAGTGTTTGGTTGGATTGCCGCTATGGTGCTATAG
Upstream 100 bases:
>100_bases ATTCTCAGATATTTTGCAGAATAATTCTCGCCAAACTGGACAGACACAGCCTTTGCAGTCAAAAATACGCCCTTTGGTTT ACAGAATTAAGAAATTGACT
Downstream 100 bases:
>100_bases CCGTTAACAACGGGTCAATGTAAACACAAAACGAAAGGCCGAATCGCAATGCGATTCGGCCTTTGTGATCAAACACCCTA ATATTAACAGGCTATATGAA
Product: Na+/H+ antiporter NhaC
Products: NA
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 439; Mature: 439
Protein sequence:
>439_residues MNAVVIAVCLMLALSLFRVNVVIALTVSALVAGLIGGMDLHQTIDAFNTGLGGGAQIALSYALLGAFAVALSHSGLTALI SKSIISSLGKEPNATNTHWVRWLLLLSLLAMSMASQNILPIHIAFIPILVPPLLHVMSKLNIDRRLVACVLTFGLVTTYM ILPIGFGGIFLNDILLSNLTSNGLVAVRDQIPPAMLIPAAGMVVGLLTAVFISYRKPRIYEDAKAVMAAPEESLNKRNIV IAALAILATLFVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMISAAGFAAVVKETGEVGTLVA SLGEMIGDNKALAAFLMLVVGLLITMGIGSSFSTIPIIATIYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGP TAGLNADGQHDHIRDSVIPTFIHYNIPLLVFGWIAAMVL
Sequences:
>Translated_439_residues MNAVVIAVCLMLALSLFRVNVVIALTVSALVAGLIGGMDLHQTIDAFNTGLGGGAQIALSYALLGAFAVALSHSGLTALI SKSIISSLGKEPNATNTHWVRWLLLLSLLAMSMASQNILPIHIAFIPILVPPLLHVMSKLNIDRRLVACVLTFGLVTTYM ILPIGFGGIFLNDILLSNLTSNGLVAVRDQIPPAMLIPAAGMVVGLLTAVFISYRKPRIYEDAKAVMAAPEESLNKRNIV IAALAILATLFVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMISAAGFAAVVKETGEVGTLVA SLGEMIGDNKALAAFLMLVVGLLITMGIGSSFSTIPIIATIYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGP TAGLNADGQHDHIRDSVIPTFIHYNIPLLVFGWIAAMVL >Mature_439_residues MNAVVIAVCLMLALSLFRVNVVIALTVSALVAGLIGGMDLHQTIDAFNTGLGGGAQIALSYALLGAFAVALSHSGLTALI SKSIISSLGKEPNATNTHWVRWLLLLSLLAMSMASQNILPIHIAFIPILVPPLLHVMSKLNIDRRLVACVLTFGLVTTYM ILPIGFGGIFLNDILLSNLTSNGLVAVRDQIPPAMLIPAAGMVVGLLTAVFISYRKPRIYEDAKAVMAAPEESLNKRNIV IAALAILATLFVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMISAAGFAAVVKETGEVGTLVA SLGEMIGDNKALAAFLMLVVGLLITMGIGSSFSTIPIIATIYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGP TAGLNADGQHDHIRDSVIPTFIHYNIPLLVFGWIAAMVL
Specific function: Unknown
COG id: COG2056
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018461 [H]
Pfam domain/function: PF03553 Na_H_antiporter [H]
EC number: NA
Molecular weight: Translated: 45895; Mature: 45895
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAVVIAVCLMLALSLFRVNVVIALTVSALVAGLIGGMDLHQTIDAFNTGLGGGAQIALS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH YALLGAFAVALSHSGLTALISKSIISSLGKEPNATNTHWVRWLLLLSLLAMSMASQNILP HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC IHIAFIPILVPPLLHVMSKLNIDRRLVACVLTFGLVTTYMILPIGFGGIFLNDILLSNLT HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC SNGLVAVRDQIPPAMLIPAAGMVVGLLTAVFISYRKPRIYEDAKAVMAAPEESLNKRNIV CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCHHH IAALAILATLFVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE SAAGFAAVVKETGEVGTLVASLGEMIGDNKALAAFLMLVVGLLITMGIGSSFSTIPIIAT EHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH IYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGPTAGLNADGQHDHIRDSVIPT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH FIHYNIPLLVFGWIAAMVL HHHCCCHHHHHHHHHHHHC >Mature Secondary Structure MNAVVIAVCLMLALSLFRVNVVIALTVSALVAGLIGGMDLHQTIDAFNTGLGGGAQIALS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH YALLGAFAVALSHSGLTALISKSIISSLGKEPNATNTHWVRWLLLLSLLAMSMASQNILP HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC IHIAFIPILVPPLLHVMSKLNIDRRLVACVLTFGLVTTYMILPIGFGGIFLNDILLSNLT HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC SNGLVAVRDQIPPAMLIPAAGMVVGLLTAVFISYRKPRIYEDAKAVMAAPEESLNKRNIV CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCHHH IAALAILATLFVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE SAAGFAAVVKETGEVGTLVASLGEMIGDNKALAAFLMLVVGLLITMGIGSSFSTIPIIAT EHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH IYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGPTAGLNADGQHDHIRDSVIPT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH FIHYNIPLLVFGWIAAMVL HHHCCCHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12620739; 8021208 [H]