| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yeaH [C]
Identifier: 120599144
GI number: 120599144
Start: 2695525
End: 2696799
Strand: Direct
Name: yeaH [C]
Synonym: Sputw3181_2340
Alternate gene names: 120599144
Gene position: 2695525-2696799 (Clockwise)
Preceding gene: 120599143
Following gene: 120599145
Centisome position: 57.25
GC content: 44.16
Gene sequence:
>1275_bases GTGCGTATGGCGAACTTTATCGATAGACGGTTGAATGCGAAAGGAAAAAGCACAGTCAACCGCCAACGCTTTATCAATAG ATATAAGCAACAAATTAAAAAAGCCGTCAGTGATGCCGTCACGCGTCGCAGTGTAACGGATGTAGATAAAGGCGAAAAAA TCAGTATCCCAACTCGGGATATTAGCGAACCCATGTTTCACCAAGGCAAAGGCGGTGTCAGGGACAGAGTACATCCTGGT AATGACCAATTTACCCGTGGCGATAAAATTGACCGACCACCCGGTGGTGCAGGCGGCGGAGCGGGTAAAGGCGATGCCTC TGATTCAGGTGAAGGGAACGATGATTTTGTCTTTGAAATTTCAAAGGATGAATACCTAGAACTATTATTTGAAGACTTAG AATTACCGAATCTACAAAAAAACCGCCTTAATAAATTGGTGGAATATCAGGTTTATCGCGCCGGATTTACCAACGATGGC GTCCCCGCCAACATTAATATTGTCCGTTCCCTACGCTCTTCACTGGCACGGCGCATTGCGATGTCGGCCAGTAAAAAAAA GCTATTAGCGGAATTAGAACAAGAGTTGGCAGAACTTGAGAATATCCCAGGGACTCAGGCAGAGCGGCTCCTCGATTTAA AGGCTCAAATAGAGGTACTTAAACAAAAAATTGCGAAAGTCCCATTTATCGACACCTTCGACTTACGTTTTAACAACTTC AGCAAACGAGAAATCCCATCAAGCCAAGCCGTCATGTTCTGTTTGATGGACGTGTCTGGTTCTATGGATCAGGCAACTAA AGATATGGCAAAACGCTTCTATATCTTGCTGTATCTGTTCCTCACCCGCACCTATAAAAACTTAGAAGTGGTTTACATTC GTCACCACACTCAAGCCAAAGAAGTCGATGAACACGAGTTCTTCTACTCCCAAGAAACAGGCGGAACGATTGTTTCAAGT GCTTTAAAACTGATGCATGAAATACAGCAGGCGCGTTATCCCGCCGATGAATGGAATATTTATGCCGCACAAGCATCTGA TGGTGATAACTGGGCGGATGACTCTCCCACATGTCGGCAGTTATTAGAACAAAAAATCCTGCCGTTAGTACGCTACTTTA GTTATATCGAAATTACTAACCGCGCCCATCAAACACTGTGGCGAGAATATGAGTCCCTAGAACAACACTACGACAACATC GCTGTGCAGCATATACGTCAAGCCGAAGATATTTACCCTGTATTTAGAGAATTATTTAAGAAACAGGCGGTTTAA
Upstream 100 bases:
>100_bases CTTGTCTGAGTGGTATTTACGGGTGCGTAAATCTTCTTAAACTTGCGCTAACTAAGTAAAGGGCTTTGGTGTTGCCAAAG CCTTCGCTGGGTTTTGGGAG
Downstream 100 bases:
>100_bases GGGGGCAGTATGGGGAAAACGACATCAAGAACACGATTGAGCGATGGTCCAGATTGGAGCTTTGAGCTGCTGCAGGATTA TCTCAAAGAAATCGAAAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MRMANFIDRRLNAKGKSTVNRQRFINRYKQQIKKAVSDAVTRRSVTDVDKGEKISIPTRDISEPMFHQGKGGVRDRVHPG NDQFTRGDKIDRPPGGAGGGAGKGDASDSGEGNDDFVFEISKDEYLELLFEDLELPNLQKNRLNKLVEYQVYRAGFTNDG VPANINIVRSLRSSLARRIAMSASKKKLLAELEQELAELENIPGTQAERLLDLKAQIEVLKQKIAKVPFIDTFDLRFNNF SKREIPSSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLTRTYKNLEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSS ALKLMHEIQQARYPADEWNIYAAQASDGDNWADDSPTCRQLLEQKILPLVRYFSYIEITNRAHQTLWREYESLEQHYDNI AVQHIRQAEDIYPVFRELFKKQAV
Sequences:
>Translated_424_residues MRMANFIDRRLNAKGKSTVNRQRFINRYKQQIKKAVSDAVTRRSVTDVDKGEKISIPTRDISEPMFHQGKGGVRDRVHPG NDQFTRGDKIDRPPGGAGGGAGKGDASDSGEGNDDFVFEISKDEYLELLFEDLELPNLQKNRLNKLVEYQVYRAGFTNDG VPANINIVRSLRSSLARRIAMSASKKKLLAELEQELAELENIPGTQAERLLDLKAQIEVLKQKIAKVPFIDTFDLRFNNF SKREIPSSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLTRTYKNLEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSS ALKLMHEIQQARYPADEWNIYAAQASDGDNWADDSPTCRQLLEQKILPLVRYFSYIEITNRAHQTLWREYESLEQHYDNI AVQHIRQAEDIYPVFRELFKKQAV >Mature_424_residues MRMANFIDRRLNAKGKSTVNRQRFINRYKQQIKKAVSDAVTRRSVTDVDKGEKISIPTRDISEPMFHQGKGGVRDRVHPG NDQFTRGDKIDRPPGGAGGGAGKGDASDSGEGNDDFVFEISKDEYLELLFEDLELPNLQKNRLNKLVEYQVYRAGFTNDG VPANINIVRSLRSSLARRIAMSASKKKLLAELEQELAELENIPGTQAERLLDLKAQIEVLKQKIAKVPFIDTFDLRFNNF SKREIPSSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLTRTYKNLEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSS ALKLMHEIQQARYPADEWNIYAAQASDGDNWADDSPTCRQLLEQKILPLVRYFSYIEITNRAHQTLWREYESLEQHYDNI AVQHIRQAEDIYPVFRELFKKQAV
Specific function: Unknown
COG id: COG2718
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0229 family [H]
Homologues:
Organism=Escherichia coli, GI1788084, Length=421, Percent_Identity=68.1710213776722, Blast_Score=596, Evalue=1e-172,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006698 [H]
Pfam domain/function: PF04285 DUF444 [H]
EC number: NA
Molecular weight: Translated: 48759; Mature: 48759
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMANFIDRRLNAKGKSTVNRQRFINRYKQQIKKAVSDAVTRRSVTDVDKGEKISIPTRD CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHH ISEPMFHQGKGGVRDRVHPGNDQFTRGDKIDRPPGGAGGGAGKGDASDSGEGNDDFVFEI CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE SKDEYLELLFEDLELPNLQKNRLNKLVEYQVYRAGFTNDGVPANINIVRSLRSSLARRIA CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH MSASKKKLLAELEQELAELENIPGTQAERLLDLKAQIEVLKQKIAKVPFIDTFDLRFNNF HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC SKREIPSSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLTRTYKNLEVVYIRHHTQAK CHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHH EVDEHEFFYSQETGGTIVSSALKLMHEIQQARYPADEWNIYAAQASDGDNWADDSPTCRQ HCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHH LLEQKILPLVRYFSYIEITNRAHQTLWREYESLEQHYDNIAVQHIRQAEDIYPVFRELFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQAV HCCC >Mature Secondary Structure MRMANFIDRRLNAKGKSTVNRQRFINRYKQQIKKAVSDAVTRRSVTDVDKGEKISIPTRD CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHH ISEPMFHQGKGGVRDRVHPGNDQFTRGDKIDRPPGGAGGGAGKGDASDSGEGNDDFVFEI CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE SKDEYLELLFEDLELPNLQKNRLNKLVEYQVYRAGFTNDGVPANINIVRSLRSSLARRIA CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH MSASKKKLLAELEQELAELENIPGTQAERLLDLKAQIEVLKQKIAKVPFIDTFDLRFNNF HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC SKREIPSSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLTRTYKNLEVVYIRHHTQAK CHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHH EVDEHEFFYSQETGGTIVSSALKLMHEIQQARYPADEWNIYAAQASDGDNWADDSPTCRQ HCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHH LLEQKILPLVRYFSYIEITNRAHQTLWREYESLEQHYDNIAVQHIRQAEDIYPVFRELFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQAV HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]