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The map label for this gene is ydaM [H]

Identifier: 120599088

GI number: 120599088

Start: 2630432

End: 2631457

Strand: Direct

Name: ydaM [H]

Synonym: Sputw3181_2284

Alternate gene names: 120599088

Gene position: 2630432-2631457 (Clockwise)

Preceding gene: 120599086

Following gene: 120599091

Centisome position: 55.87

GC content: 44.83

Gene sequence:

>1026_bases
ATGTCACGAGAATTATTACAAACCGCCGCATTAAATTTAAAAAAAGCCGTTCCGCTAATGCTAAAACATAAAATTCCCAC
GACACCTGTGAATTATGCACTCTGGTACACCTATGTCGGGGAGCAAAATTCAGCATTAAATGAGCAGCTTGATACTGTTA
TCGCGCAATACAATACCTGTCCGCCTGTGAGTAGTGAGTTGCTCTACCGCCAATATGTGGCCGATCCCGTCGAATTGGAC
GTACGAGAAATGCGCCAAAATTTAGATGCCATGGTGACTGAGCTTTCGCAATCGCTCAAAGACACCAATCTTGATACCCA
TGAGTTTCAATCCCGTATTGAGAGCAATTTTGAGAAACTCCATCGTATTGAAGATGAAGGTTTTAGTGTCGAGCAAGTAC
TCGATTTAGTGCGGAGTTTAGTAAAAGAATCCGACAATATTCGTTCTAGCACTGAATTTTTCACCGGACAATTACAAAAG
GCACAAACGGAAATCGATGCCCTTAAGAAAAAACTCGAACAAACGGAAAAAGATGTACTTTACGATGCGCTCACAGGGTG
CCTTAACCGCCGCGCATTTGATGCCGACTTCAGCGGTATGCTAACCCAAGCTCCCGAAGGGACTTGCGTCATTTTGGTCG
ATATCGATCACTTTAAAGTGTTTAACGACTCCTATGGTCACCAAATGGGCGATCAGGTATTGCGTGCCGTTGCTAAGCGC
TTACAAGAATCCTGCCGTGATGGAATTAAACTGTACCGCTTTGGCGGTGAAGAGTTCGCCATTCTCGTGCCTAAAAGCCA
ATTACGCATTGCCCGTCAATTGGCTGAAGCCATGCGCCGAGGGCTTGAAAAGCTCAGCTTAAAAGACAGACGTAAAGATG
AACGCATCGATAATATCAGTGCCTCTTTTGGTGTCGCGCAATGGCAAGAAAAACAAACAGGGCTTCAACTGATTGAAAAG
GCGGATAAGTTACTCTATGAAGCCAAACGACTCGGCCGTAATCGGGTGATGCCAATAAGTAACTAG

Upstream 100 bases:

>100_bases
GTTTTACATCGGTGGCATGCTGTTTAACATCAGCGATAGATGGCGCTAACGACTCAGTCCACCGCTCTTATTGGTCGTTT
TTATTGATTAAGGTCACTGC

Downstream 100 bases:

>100_bases
GCATGTTGATATTTCAGATGGCTTTAGCATTTGAAACATCATCACGCCTTAGCTGAAACGAGGTGATTTACGAGGATAAA
ACGGGCACGGCTTGTACCAC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSRELLQTAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNSALNEQLDTVIAQYNTCPPVSSELLYRQYVADPVELD
VREMRQNLDAMVTELSQSLKDTNLDTHEFQSRIESNFEKLHRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQK
AQTEIDALKKKLEQTEKDVLYDALTGCLNRRAFDADFSGMLTQAPEGTCVILVDIDHFKVFNDSYGHQMGDQVLRAVAKR
LQESCRDGIKLYRFGGEEFAILVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERIDNISASFGVAQWQEKQTGLQLIEK
ADKLLYEAKRLGRNRVMPISN

Sequences:

>Translated_341_residues
MSRELLQTAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNSALNEQLDTVIAQYNTCPPVSSELLYRQYVADPVELD
VREMRQNLDAMVTELSQSLKDTNLDTHEFQSRIESNFEKLHRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQK
AQTEIDALKKKLEQTEKDVLYDALTGCLNRRAFDADFSGMLTQAPEGTCVILVDIDHFKVFNDSYGHQMGDQVLRAVAKR
LQESCRDGIKLYRFGGEEFAILVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERIDNISASFGVAQWQEKQTGLQLIEK
ADKLLYEAKRLGRNRVMPISN
>Mature_340_residues
SRELLQTAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNSALNEQLDTVIAQYNTCPPVSSELLYRQYVADPVELDV
REMRQNLDAMVTELSQSLKDTNLDTHEFQSRIESNFEKLHRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKA
QTEIDALKKKLEQTEKDVLYDALTGCLNRRAFDADFSGMLTQAPEGTCVILVDIDHFKVFNDSYGHQMGDQVLRAVAKRL
QESCRDGIKLYRFGGEEFAILVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERIDNISASFGVAQWQEKQTGLQLIEKA
DKLLYEAKRLGRNRVMPISN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=37.2093023255814, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=39.5061728395062, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693134, Length=196, Percent_Identity=34.1836734693878, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=36.6459627329193, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=40.2366863905325, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=33.1460674157303, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=32.9411764705882, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=32.0754716981132, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787056, Length=171, Percent_Identity=34.5029239766082, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=31.9277108433735, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=30.0578034682081, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=27.3291925465839, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 39054; Mature: 38923

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRELLQTAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNSALNEQLDTVIAQYNTC
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
PPVSSELLYRQYVADPVELDVREMRQNLDAMVTELSQSLKDTNLDTHEFQSRIESNFEKL
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVL
HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTGCLNRRAFDADFSGMLTQAPEGTCVILVDIDHFKVFNDSYGHQMGDQVLRAVAKR
HHHHHHHHHCCCCCCCHHCHHCCCCCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHH
LQESCRDGIKLYRFGGEEFAILVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERIDNIS
HHHHHHCCHHEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFGVAQWQEKQTGLQLIEKADKLLYEAKRLGRNRVMPISN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SRELLQTAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNSALNEQLDTVIAQYNTC
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
PPVSSELLYRQYVADPVELDVREMRQNLDAMVTELSQSLKDTNLDTHEFQSRIESNFEKL
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVL
HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTGCLNRRAFDADFSGMLTQAPEGTCVILVDIDHFKVFNDSYGHQMGDQVLRAVAKR
HHHHHHHHHCCCCCCCHHCHHCCCCCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHH
LQESCRDGIKLYRFGGEEFAILVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERIDNIS
HHHHHHCCHHEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFGVAQWQEKQTGLQLIEKADKLLYEAKRLGRNRVMPISN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]