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The map label for this gene is rbgA

Identifier: 120599077

GI number: 120599077

Start: 2620340

End: 2621281

Strand: Direct

Name: rbgA

Synonym: Sputw3181_2273

Alternate gene names: 120599077

Gene position: 2620340-2621281 (Clockwise)

Preceding gene: 120599076

Following gene: 120599082

Centisome position: 55.65

GC content: 48.41

Gene sequence:

>942_bases
ATGGCAATTCAGTGGTATCCGGGGCATATGCACAAGGCACGCAAGGAGATTGAAGAGGCAATGCCTCAGGTCGATCTTGT
TATCGAAGTGCTGGACGCGCGTATTCCCTATAGTAGCGAAAACCCCATGGTGGCTCAGCTTCGAGGCGACAAACCTTGTA
TCAAACTGCTCAACAAATCTGATTTGGCCGATCCAGAGATCACCGCACAATGGATTGAATATTTAGAGCGTGAGCAAGGC
GTCAAAGCCACGGCGATCACCACACTTCAAGCGGCAATGGTGAAAAAAATTCCTGATCTCTGCCGTAAGCTAGTGCCGAG
TCGCGATAAAACCGAAAAAGACATTCGCACTATGATCATGGGAATACCCAATGTTGGGAAATCCACCATCATCAATACCT
TAGCTGGTCGTGTTATCGCCAAAACCGGTAACGAACCTGCGGTAACCAAAACCCAGCAACGGATCAATTTACGTAACGGT
ATCGTGCTGTCGGATACCCCAGGTATTTTGTGGCCTAAAGTGGATAACGAAGCCAGCAGCTATCGCCTTGCCGTCACTGG
CGCCATTAAAGATACCGCGATGGAATATGAAGATGTGGCCCTGTTTGCTGCTAAGTATTTCTTAACCGCTTATCCAAAAG
AGATTTGTGAGCGCTACAACCTCAGTGAATTACCTAAGGATGATGTCGCTTTACTTGAGGCGATAGGCCGCAAACGTGGT
GCCCTGCGTCCCGGTGGTCGCATCGATATGCACAAGGCATCTGAGTTGTTACTACATGAATACCGCTCAGGAAAAATAGG
CTTACTCTCGTTAGAAACGCCTGCGATGGCCGAGCTTGAAAAGATTGAAGTCGCCCGTATCATGGCCGAAAAAGAAGCAG
AGAAAGAAGCTAAGCTAGCAGCAGAGAGACTGAAACGTTCAGGCAAACGCCATAACGATTAG

Upstream 100 bases:

>100_bases
GATTAAGCAATTAAAGCGCCTTTGGGCGCTTTTTTTATGACATTCACCACCATCAAGGTAGAATAGCCGTTCTTTAAGTT
ATTTAGGACAAGGCGTTATC

Downstream 100 bases:

>100_bases
TCAGCCACTCTGCATTTGGAATATAGGACGCAGATTTTGCTAAAGACAAGATGCTAATGACTTTTATATTCCAGCTTAGT
GCGCTCATTCATTAAATTTA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQG
VKATAITTLQAAMVKKIPDLCRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNG
IVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLSELPKDDVALLEAIGRKRG
ALRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAEKEAEKEAKLAAERLKRSGKRHND

Sequences:

>Translated_313_residues
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQG
VKATAITTLQAAMVKKIPDLCRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNG
IVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLSELPKDDVALLEAIGRKRG
ALRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAEKEAEKEAKLAAERLKRSGKRHND
>Mature_312_residues
AIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQGV
KATAITTLQAAMVKKIPDLCRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNGI
VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLSELPKDDVALLEAIGRKRGA
LRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAEKEAEKEAKLAAERLKRSGKRHND

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=210, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI7019419, Length=258, Percent_Identity=25.968992248062, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI296317324, Length=286, Percent_Identity=25.8741258741259, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI9506611, Length=286, Percent_Identity=25.8741258741259, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=30.5555555555556, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17534827, Length=275, Percent_Identity=30.9090909090909, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32563985, Length=226, Percent_Identity=28.3185840707965, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71990926, Length=226, Percent_Identity=28.3185840707965, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI32563983, Length=226, Percent_Identity=28.3185840707965, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI115535155, Length=283, Percent_Identity=24.3816254416961, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25143545, Length=283, Percent_Identity=24.3816254416961, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324381, Length=269, Percent_Identity=27.8810408921933, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6320842, Length=304, Percent_Identity=28.6184210526316, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI85815858, Length=302, Percent_Identity=29.1390728476821, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI19922460, Length=311, Percent_Identity=25.4019292604502, Blast_Score=81, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35012; Mature: 34881

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKS
CEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHCCC
DLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDLCRKLVPSRDKTEKDIRTMIM
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEASS
CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLSELPKDDVALLEAIGRKRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
ALRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAEKEAEKEAKLA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AERLKRSGKRHND
HHHHHHCCCCCCC
>Mature Secondary Structure 
AIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKS
EEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHCCC
DLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDLCRKLVPSRDKTEKDIRTMIM
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEASS
CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLSELPKDDVALLEAIGRKRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
ALRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAEKEAEKEAKLA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AERLKRSGKRHND
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]