| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599043
Identifier: 120599043
GI number: 120599043
Start: 2587387
End: 2588022
Strand: Direct
Name: 120599043
Synonym: Sputw3181_2239
Alternate gene names: NA
Gene position: 2587387-2588022 (Clockwise)
Preceding gene: 120599042
Following gene: 120599044
Centisome position: 54.95
GC content: 47.8
Gene sequence:
>636_bases GTGTCATTAGAGCTTGGTGACGTGGTCTGCGAAGCTGGCTCGAAGCTGCGTTATGTCTATTTTCCACTGGACTCTATTAT TTCACTGCTCTATGTGATGGAAAATGGTGCATCTGCTGAAATTGCAGTCGTTGGCAATGATGGCATGGTCGGCGTTGCAC TGTTTATGGGGGGAGAAAGCACCACGAGTCGAGCCGTAGTACAAAGCGCTGGCGTTGCCTATCGGTTGTTTGGTCAACGG CTCAAAGACGAATTTAACCGCCATGGTGCTCTGCTCCACCTCTTGCTACGTTATAGCCAAGTATTGCTCACCCAAATGGC CCAAACGGCAGTTTGCAATCGCCACCATAGTATTGAACAGCAACTATGCCGCTGGCTGTTACTCTCTATCGATAGGCTAT CGGATGATCGCGTATTGATGACGCAGGAATTAATTGCCAATATGCTTGGCGTACGCCGAGAAGGCGTCACCGATGCTGCA GGAAAACTGCAACGAATGGGAATAATCAATTACAGTCGCGGTAATATTGAGGTACTGAACCGCAAATTGCTGGAGCAAAC CTGTTGTGAATGTTACTCAGTCGTTAAGCAGGAGTCAGAACGTCTGATGCCACTAAAAAATGGCACTAAAAAATAG
Upstream 100 bases:
>100_bases AACAGGCACTGAAAAAGGCTAATGCCCCCCCGAAAACAACCGGTTACTAAACGACTTACCTGATGAAGTCAAACAGCGTA TTTTCCCGCATCTAGAGCTA
Downstream 100 bases:
>100_bases TCAACCTCGCAGGCTATTTCAGTCATACATACTCTAGATAAACTTTACCGTTGTAAAACCCTATTTTACTAAGGTGAAAG TTCAGACTTCAGATAGCAAA
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: CRP/FNR Family Transcriptional Regulator; Crp/FNR Family Transcriptional Regulator; Crp/Fnr Family Transcriptional Regulator; Transcriptional Regulator-Related Protein; Regulatory Protein Crp; Transcriptional Regulator Protein; Transcriptional Regulator; Regulatory Subunit Of CAMP-Dependent Protein Kinases; Transcription Regulator Crp Family; Transcriptional Regulatory Protein; GntR Family Transcriptional Regulator; Two-Component Response Regulator Protein; Transcriptional Regulator CAP/Crp Family; Transcriptional Regulator Crp/Fnr Family Protein
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MSLELGDVVCEAGSKLRYVYFPLDSIISLLYVMENGASAEIAVVGNDGMVGVALFMGGESTTSRAVVQSAGVAYRLFGQR LKDEFNRHGALLHLLLRYSQVLLTQMAQTAVCNRHHSIEQQLCRWLLLSIDRLSDDRVLMTQELIANMLGVRREGVTDAA GKLQRMGIINYSRGNIEVLNRKLLEQTCCECYSVVKQESERLMPLKNGTKK
Sequences:
>Translated_211_residues MSLELGDVVCEAGSKLRYVYFPLDSIISLLYVMENGASAEIAVVGNDGMVGVALFMGGESTTSRAVVQSAGVAYRLFGQR LKDEFNRHGALLHLLLRYSQVLLTQMAQTAVCNRHHSIEQQLCRWLLLSIDRLSDDRVLMTQELIANMLGVRREGVTDAA GKLQRMGIINYSRGNIEVLNRKLLEQTCCECYSVVKQESERLMPLKNGTKK >Mature_210_residues SLELGDVVCEAGSKLRYVYFPLDSIISLLYVMENGASAEIAVVGNDGMVGVALFMGGESTTSRAVVQSAGVAYRLFGQRL KDEFNRHGALLHLLLRYSQVLLTQMAQTAVCNRHHSIEQQLCRWLLLSIDRLSDDRVLMTQELIANMLGVRREGVTDAAG KLQRMGIINYSRGNIEVLNRKLLEQTCCECYSVVKQESERLMPLKNGTKK
Specific function: Unknown
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23544; Mature: 23413
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: PS51063 HTH_CRP_2 ; PS00572 GLYCOSYL_HYDROL_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLELGDVVCEAGSKLRYVYFPLDSIISLLYVMENGASAEIAVVGNDGMVGVALFMGGES CCCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCC TTSRAVVQSAGVAYRLFGQRLKDEFNRHGALLHLLLRYSQVLLTQMAQTAVCNRHHSIEQ HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLCRWLLLSIDRLSDDRVLMTQELIANMLGVRREGVTDAAGKLQRMGIINYSRGNIEVLN HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEECCCCHHHHH RKLLEQTCCECYSVVKQESERLMPLKNGTKK HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SLELGDVVCEAGSKLRYVYFPLDSIISLLYVMENGASAEIAVVGNDGMVGVALFMGGES CCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCC TTSRAVVQSAGVAYRLFGQRLKDEFNRHGALLHLLLRYSQVLLTQMAQTAVCNRHHSIEQ HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLCRWLLLSIDRLSDDRVLMTQELIANMLGVRREGVTDAAGKLQRMGIINYSRGNIEVLN HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEECCCCHHHHH RKLLEQTCCECYSVVKQESERLMPLKNGTKK HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA