| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599011
Identifier: 120599011
GI number: 120599011
Start: 2546144
End: 2546566
Strand: Direct
Name: 120599011
Synonym: Sputw3181_2206
Alternate gene names: NA
Gene position: 2546144-2546566 (Clockwise)
Preceding gene: 120599010
Following gene: 120599012
Centisome position: 54.08
GC content: 42.55
Gene sequence:
>423_bases TTGTCATTTTCTTGGGAAATTGAGGTGATTAGCTCACCAAAAGAAACACTAAATTATAGATATGGGTGTGACACATTATG TCATCCAGAGGAGATCCAAGTGCGAAACCAAGATATCAGCGAAGACAACATTATCCATTCCACTAGCAGTCATCAGGTTC AATATCGACTGCCCTTTGAACTGTTCAATGATCAGTTTGGGCAAACCGTTTATGAGATCAGCAGAATGCCGATTATCGAT GGCTACTTGTTAGGCGGAGAAGTGAGTCTTGCGAGTGCTTTGGTAAGACGTTGCGGTTACTCATTGAGAACGGCAAGAAG ACATATTCGACGCTTGGAACAATCGGGACTGATTACAAGCACACCTCAAAGAACACTTGCAGGTTTGCAAGCTGCTCATC TTTATAGGCGGATATTTAGCTAA
Upstream 100 bases:
>100_bases TAAAGATAACAATTAATTCCAAATTGGAATTTACTAATAGTTAATCATAAAAATATATCATGCAAATGATTGTCCGCAAT AATTCGCCACTATCTCGAAT
Downstream 100 bases:
>100_bases AGATGAGGGAATGCTTTGACAGGGCGTAACAAAAGAAAACCCTGCCAAAGCTGAGCTTTACCAATAACCATGTGGCCAAG CAATAGACTAACTCAATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MSFSWEIEVISSPKETLNYRYGCDTLCHPEEIQVRNQDISEDNIIHSTSSHQVQYRLPFELFNDQFGQTVYEISRMPIID GYLLGGEVSLASALVRRCGYSLRTARRHIRRLEQSGLITSTPQRTLAGLQAAHLYRRIFS
Sequences:
>Translated_140_residues MSFSWEIEVISSPKETLNYRYGCDTLCHPEEIQVRNQDISEDNIIHSTSSHQVQYRLPFELFNDQFGQTVYEISRMPIID GYLLGGEVSLASALVRRCGYSLRTARRHIRRLEQSGLITSTPQRTLAGLQAAHLYRRIFS >Mature_139_residues SFSWEIEVISSPKETLNYRYGCDTLCHPEEIQVRNQDISEDNIIHSTSSHQVQYRLPFELFNDQFGQTVYEISRMPIIDG YLLGGEVSLASALVRRCGYSLRTARRHIRRLEQSGLITSTPQRTLAGLQAAHLYRRIFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16152; Mature: 16020
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSWEIEVISSPKETLNYRYGCDTLCHPEEIQVRNQDISEDNIIHSTSSHQVQYRLPFE CCCEEEEEEECCCHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCEEEEECCHH LFNDQFGQTVYEISRMPIIDGYLLGGEVSLASALVRRCGYSLRTARRHIRRLEQSGLITS HHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC TPQRTLAGLQAAHLYRRIFS CCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SFSWEIEVISSPKETLNYRYGCDTLCHPEEIQVRNQDISEDNIIHSTSSHQVQYRLPFE CCEEEEEEECCCHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCEEEEECCHH LFNDQFGQTVYEISRMPIIDGYLLGGEVSLASALVRRCGYSLRTARRHIRRLEQSGLITS HHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC TPQRTLAGLQAAHLYRRIFS CCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA