| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598742
Identifier: 120598742
GI number: 120598742
Start: 2223639
End: 2224958
Strand: Direct
Name: 120598742
Synonym: Sputw3181_1927
Alternate gene names: NA
Gene position: 2223639-2224958 (Clockwise)
Preceding gene: 120598741
Following gene: 120598743
Centisome position: 47.23
GC content: 44.09
Gene sequence:
>1320_bases ATGACAAATAAACAAAATACCATTCCAAATAGACAAACAAAGCAGATTGCAGGTGCCTTAGCACTCGCCAGTTGTGGCCT GTTTACCACCAGTGCCCATGCCACTGAATTAGCTAAAAAAAACGATGAGTGGAAAATTGATGCCGCGCTAATGTATTACG GCGAGCAAGATAGAGTACAGGCGATTGAGGCGATTGGAACCGCACAAAAGGCCTTTGGTGATGAGAGTGTGTTGGATCTC AAATTGGTTGTTGATAGTTTAACAGGTGCATCAGCATCGGGAGCCGTCGCTCAAAACAGCAGTCAAACCTTTACTCGTCC CTCTGGTAATGGTCAGTATCATGTATCCGCGGGGGAAACGCCGTTAGATGACACCTTCCATGATACGCGTGTGCAAGCCA ATGCGGCTTGGAGCGAAGTGCTGGATCCGGATTGGAAGCTCAATGTTGGTGTCTATGGTTCTAAAGAGTTTGATTATATG TCTATCGGAACCAATGTTGGCATTGAGCGGGGCTTTAATAAGGATAATACGACGTTATTTTTAGGGACCGCCTACAGTTT TGATGTGGTCGATCCAGTCGGAGGGCGGCCAGTCGATTTATCTTCTATGGCGATTCGCGATAACTTCACGACGCAGGAGG CCTATCGCAGTGCATTTGATGCGACACGTCAAGGAGGTAGCGATAATAAACAAACGGCCGAGGTTATGTTAGGTGTTACC CAAGTACTCAATCAGCGTTGGTTATTACAAGCAAACTATGGTTTATCGAGTGTTAATGGCTACTTGACCGATCCCTATAA AGTACTCAGTGTGGTCGATAAGAATGGTGTCACTCAGGATATATTGTATGAAAGTAGGCCTGACTCCCGCTTAAAACACA GTTTTTATGTGATGACAAAAGGGGCATTAGATTCTGGTGTGGTCGATTTTTCCTACCGCTACAATACCGATGATTGGGAT CTCACCTCGCATACCCTAGAGACCCATTACCGTTATTATTTTAGCGGCAGTTTCTATGGTCAATTGCATTTACGTTACTA CCAACAAAGTGCGGTCGATTTTTATCAGCCCTTTTTAATGGCTGATATTCCATTACCTGAGTTTGCCAGTGCCGATTACC GAATTGGGGAGATGACGGCGTACACCATTGGGATTAAATTTGGTCATAAACTATCGGGTGGACACGAAATGTCTTATCGA TTGGAATATTATCAACAAGATCCTAAAAATAACGGCACAAGTATTCCTGGAGAGCTACAAAATTTCGATCTTTTCCCGAC TCAAAAGGCGATTGCAGCACAGTTTAGTTATTCTTTTTAA
Upstream 100 bases:
>100_bases TGGTGGGTGTGGCTGTAATTAGTGCGTTATGTGACTAATGTTCTCTGCTATATCGCGGCGATCAACATTAAAATCAAGTA GCCTACAGGTGTTGTCAGTT
Downstream 100 bases:
>100_bases GCGATTTGTTGAGTCAGTGGAATAAAAAGATGTTGGCGCTAATAAGTATGGGAAGCTTTGCAACCCATACTTATTCATTT ATTTCCCGCCATGCTTAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 439; Mature: 438
Protein sequence:
>439_residues MTNKQNTIPNRQTKQIAGALALASCGLFTTSAHATELAKKNDEWKIDAALMYYGEQDRVQAIEAIGTAQKAFGDESVLDL KLVVDSLTGASASGAVAQNSSQTFTRPSGNGQYHVSAGETPLDDTFHDTRVQANAAWSEVLDPDWKLNVGVYGSKEFDYM SIGTNVGIERGFNKDNTTLFLGTAYSFDVVDPVGGRPVDLSSMAIRDNFTTQEAYRSAFDATRQGGSDNKQTAEVMLGVT QVLNQRWLLQANYGLSSVNGYLTDPYKVLSVVDKNGVTQDILYESRPDSRLKHSFYVMTKGALDSGVVDFSYRYNTDDWD LTSHTLETHYRYYFSGSFYGQLHLRYYQQSAVDFYQPFLMADIPLPEFASADYRIGEMTAYTIGIKFGHKLSGGHEMSYR LEYYQQDPKNNGTSIPGELQNFDLFPTQKAIAAQFSYSF
Sequences:
>Translated_439_residues MTNKQNTIPNRQTKQIAGALALASCGLFTTSAHATELAKKNDEWKIDAALMYYGEQDRVQAIEAIGTAQKAFGDESVLDL KLVVDSLTGASASGAVAQNSSQTFTRPSGNGQYHVSAGETPLDDTFHDTRVQANAAWSEVLDPDWKLNVGVYGSKEFDYM SIGTNVGIERGFNKDNTTLFLGTAYSFDVVDPVGGRPVDLSSMAIRDNFTTQEAYRSAFDATRQGGSDNKQTAEVMLGVT QVLNQRWLLQANYGLSSVNGYLTDPYKVLSVVDKNGVTQDILYESRPDSRLKHSFYVMTKGALDSGVVDFSYRYNTDDWD LTSHTLETHYRYYFSGSFYGQLHLRYYQQSAVDFYQPFLMADIPLPEFASADYRIGEMTAYTIGIKFGHKLSGGHEMSYR LEYYQQDPKNNGTSIPGELQNFDLFPTQKAIAAQFSYSF >Mature_438_residues TNKQNTIPNRQTKQIAGALALASCGLFTTSAHATELAKKNDEWKIDAALMYYGEQDRVQAIEAIGTAQKAFGDESVLDLK LVVDSLTGASASGAVAQNSSQTFTRPSGNGQYHVSAGETPLDDTFHDTRVQANAAWSEVLDPDWKLNVGVYGSKEFDYMS IGTNVGIERGFNKDNTTLFLGTAYSFDVVDPVGGRPVDLSSMAIRDNFTTQEAYRSAFDATRQGGSDNKQTAEVMLGVTQ VLNQRWLLQANYGLSSVNGYLTDPYKVLSVVDKNGVTQDILYESRPDSRLKHSFYVMTKGALDSGVVDFSYRYNTDDWDL TSHTLETHYRYYFSGSFYGQLHLRYYQQSAVDFYQPFLMADIPLPEFASADYRIGEMTAYTIGIKFGHKLSGGHEMSYRL EYYQQDPKNNGTSIPGELQNFDLFPTQKAIAAQFSYSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48844; Mature: 48712
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNKQNTIPNRQTKQIAGALALASCGLFTTSAHATELAKKNDEWKIDAALMYYGEQDRVQ CCCCCCCCCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHCCCCEEEEEEEEEECCHHHHH AIEAIGTAQKAFGDESVLDLKLVVDSLTGASASGAVAQNSSQTFTRPSGNGQYHVSAGET HHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCCCEECCCCCCEECCCCCCEEEEECCCC PLDDTFHDTRVQANAAWSEVLDPDWKLNVGVYGSKEFDYMSIGTNVGIERGFNKDNTTLF CCCCCCCCCEEECCCCHHHHCCCCCEEEEEEECCCCCCEEEECCCCCHHCCCCCCCCEEE LGTAYSFDVVDPVGGRPVDLSSMAIRDNFTTQEAYRSAFDATRQGGSDNKQTAEVMLGVT EEECEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH QVLNQRWLLQANYGLSSVNGYLTDPYKVLSVVDKNGVTQDILYESRPDSRLKHSFYVMTK HHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCCHHHCCEEEEEEC GALDSGVVDFSYRYNTDDWDLTSHTLETHYRYYFSGSFYGQLHLRYYQQSAVDFYQPFLM CCCCCCEEEEEEEECCCCCCCHHHHHEEEEEEEECCCEEEEEEEEEHHHHHHHHHHHHHE ADIPLPEFASADYRIGEMTAYTIGIKFGHKLSGGHEMSYRLEYYQQDPKNNGTSIPGELQ ECCCCCCCCCCCCEECCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC NFDLFPTQKAIAAQFSYSF CCCCCCCHHHHHHHCCCCC >Mature Secondary Structure TNKQNTIPNRQTKQIAGALALASCGLFTTSAHATELAKKNDEWKIDAALMYYGEQDRVQ CCCCCCCCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHCCCCEEEEEEEEEECCHHHHH AIEAIGTAQKAFGDESVLDLKLVVDSLTGASASGAVAQNSSQTFTRPSGNGQYHVSAGET HHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCCCEECCCCCCEECCCCCCEEEEECCCC PLDDTFHDTRVQANAAWSEVLDPDWKLNVGVYGSKEFDYMSIGTNVGIERGFNKDNTTLF CCCCCCCCCEEECCCCHHHHCCCCCEEEEEEECCCCCCEEEECCCCCHHCCCCCCCCEEE LGTAYSFDVVDPVGGRPVDLSSMAIRDNFTTQEAYRSAFDATRQGGSDNKQTAEVMLGVT EEECEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH QVLNQRWLLQANYGLSSVNGYLTDPYKVLSVVDKNGVTQDILYESRPDSRLKHSFYVMTK HHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCCHHHCCEEEEEEC GALDSGVVDFSYRYNTDDWDLTSHTLETHYRYYFSGSFYGQLHLRYYQQSAVDFYQPFLM CCCCCCEEEEEEEECCCCCCCHHHHHEEEEEEEECCCEEEEEEEEEHHHHHHHHHHHHHE ADIPLPEFASADYRIGEMTAYTIGIKFGHKLSGGHEMSYRLEYYQQDPKNNGTSIPGELQ ECCCCCCCCCCCCEECCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC NFDLFPTQKAIAAQFSYSF CCCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA