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The map label for this gene is ycfH [C]

Identifier: 120598614

GI number: 120598614

Start: 2067703

End: 2068545

Strand: Direct

Name: ycfH [C]

Synonym: Sputw3181_1798

Alternate gene names: 120598614

Gene position: 2067703-2068545 (Clockwise)

Preceding gene: 120598613

Following gene: 120598616

Centisome position: 43.92

GC content: 45.43

Gene sequence:

>843_bases
TTGGATGGGTATCCTTGTCGTCCTTTATTTATCTGCTTGGAAATCCCTGTGCTTATCGATTCACATTGTCATCTTGATCG
CCTAAAAGCGGCACCAGATCAATTATCCCTAGAACATATCCTTGCTGGTGCTAAAGCCCGTGGTGTTGACTATATGTTGT
GCGTGAATGTACGTCAGCAAGGATTTGAATCGATGCGTGACAAGATGGCAGCCTTTAATCAGGTATTTTTATCCTCGGGG
GTGCATCCCTTGGATGTAAAAGAAGGATTAGATGTTGAGCAAATACGCCGTTTTGCAACCGATCCTAAAGTGGTTGCCAT
TGGTGAAACGGGTTTAGATTATTTTTATGCCGATGAAACAAAACGGCTTCAACAGCAATGTTTTGAGCAGCAGATAGCCC
TTGCGGTGGAAGTGGATAAACCTTTGATTGTGCATACCCGTGATGCACGTGAAGACACGATTAATATGCTTAAGCAGGGC
GGTGCCGATAAAGTTGGCGGCGTTTTACATTGCTTTACCGAAAACTGGGAGATGGCGAAGGCGGCCATTGATCTTGGGTT
TTATATTTCGGTCTCAGGCATAGTGACTTTTAAAAATGCGGGAGATCTGCGAACGGTAATCCGTAAGGTGCCCAAGGATC
GTCTGCTAGTTGAAACAGATTCGCCTTATTTAGCGCCGATCCCACATCGTGGGCAAGAGAATCAGCCCGCCTATGTGCGC
GATGTGGCTGAATTTGTAGCAGAGCTTAGAGGCGAGCGTTACGAAGATCTAGCTGAGTACACTAGCAATAACTTCTTTAA
TTTATTCAAAGATGCGGCACGTTTAGTTGGCCGTGAAATCTAG

Upstream 100 bases:

>100_bases
TGAAAAATTACTTTCCCGTGAACTTGCTTCCGGCGATTTAACCTGCACCATGTAATCACTCGATTGCTTTGGGGCGAGAT
AGGTATTTGACCTCGATCCC

Downstream 100 bases:

>100_bases
CCTCAATCGTATTGGGTGATCAGTATAGACCGTCAGTGAACTTAGTTAGCTACTGTGATGATGGGTATAAGCGTTGCTAT
TCGGTTCAATGGTATCGCGG

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MDGYPCRPLFICLEIPVLIDSHCHLDRLKAAPDQLSLEHILAGAKARGVDYMLCVNVRQQGFESMRDKMAAFNQVFLSSG
VHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKRLQQQCFEQQIALAVEVDKPLIVHTRDAREDTINMLKQG
GADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGDLRTVIRKVPKDRLLVETDSPYLAPIPHRGQENQPAYVR
DVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGREI

Sequences:

>Translated_280_residues
MDGYPCRPLFICLEIPVLIDSHCHLDRLKAAPDQLSLEHILAGAKARGVDYMLCVNVRQQGFESMRDKMAAFNQVFLSSG
VHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKRLQQQCFEQQIALAVEVDKPLIVHTRDAREDTINMLKQG
GADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGDLRTVIRKVPKDRLLVETDSPYLAPIPHRGQENQPAYVR
DVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGREI
>Mature_280_residues
MDGYPCRPLFICLEIPVLIDSHCHLDRLKAAPDQLSLEHILAGAKARGVDYMLCVNVRQQGFESMRDKMAAFNQVFLSSG
VHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKRLQQQCFEQQIALAVEVDKPLIVHTRDAREDTINMLKQG
GADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGDLRTVIRKVPKDRLLVETDSPYLAPIPHRGQENQPAYVR
DVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGREI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=280, Percent_Identity=29.6428571428571, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI110349734, Length=280, Percent_Identity=29.6428571428571, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061853, Length=287, Percent_Identity=29.2682926829268, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI226061614, Length=267, Percent_Identity=29.5880149812734, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI225903424, Length=222, Percent_Identity=27.9279279279279, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI225903439, Length=236, Percent_Identity=28.3898305084746, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI14042943, Length=236, Percent_Identity=28.3898305084746, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=30.2127659574468, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=54.4401544401544, Blast_Score=274, Evalue=4e-75,
Organism=Escherichia coli, GI48994985, Length=237, Percent_Identity=32.0675105485232, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=31.5384615384615, Blast_Score=117, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17559024, Length=267, Percent_Identity=27.7153558052434, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=270, Percent_Identity=30, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17543026, Length=301, Percent_Identity=27.906976744186, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=168, Percent_Identity=30.952380952381, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24586117, Length=239, Percent_Identity=31.7991631799163, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI221330018, Length=239, Percent_Identity=31.7991631799163, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648690, Length=300, Percent_Identity=27.6666666666667, Blast_Score=85, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 31564; Mature: 31564

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGYPCRPLFICLEIPVLIDSHCHLDRLKAAPDQLSLEHILAGAKARGVDYMLCVNVRQQ
CCCCCCCCEEEEEEHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCHHCCCEEEEEECHHHH
GFESMRDKMAAFNQVFLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADET
HHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCEEEECCCCCCEEECCHH
KRLQQQCFEQQIALAVEVDKPLIVHTRDAREDTINMLKQGGADKVGGVLHCFTENWEMAK
HHHHHHHHHHHHEEEEECCCCEEEEECCCHHHHHHHHHCCCCCHHCCEEEEECCCHHHHH
AAIDLGFYISVSGIVTFKNAGDLRTVIRKVPKDRLLVETDSPYLAPIPHRGQENQPAYVR
HHHHHCEEEEEEEEEEECCCCHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCCCHHHH
DVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGREI
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDGYPCRPLFICLEIPVLIDSHCHLDRLKAAPDQLSLEHILAGAKARGVDYMLCVNVRQQ
CCCCCCCCEEEEEEHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCHHCCCEEEEEECHHHH
GFESMRDKMAAFNQVFLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADET
HHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCEEEECCCCCCEEECCHH
KRLQQQCFEQQIALAVEVDKPLIVHTRDAREDTINMLKQGGADKVGGVLHCFTENWEMAK
HHHHHHHHHHHHEEEEECCCCEEEEECCCHHHHHHHHHCCCCCHHCCEEEEECCCHHHHH
AAIDLGFYISVSGIVTFKNAGDLRTVIRKVPKDRLLVETDSPYLAPIPHRGQENQPAYVR
HHHHHCEEEEEEEEEEECCCCHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCCCHHHH
DVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGREI
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]