| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is icd [H]
Identifier: 120598596
GI number: 120598596
Start: 2049441
End: 2051666
Strand: Direct
Name: icd [H]
Synonym: Sputw3181_1779
Alternate gene names: 120598596
Gene position: 2049441-2051666 (Clockwise)
Preceding gene: 120598589
Following gene: 120598597
Centisome position: 43.53
GC content: 48.25
Gene sequence:
>2226_bases ATGAAAGATAACTCATCAACAATTATTTACACTGAAACAGACGAAGCGCCAGCACTGGCCACCCTCTCACTCTTACCTAT TATCAGAACGTTTACCGACGCCGCGGGCGTTGCGGTTGAAACCCGTGATATCTCGTTATCGGGCCGTATTATTGCCAGTT TCCCTGAGCAACTGACCGAAGCACAAAAGATTGGCGACCATCTGACAGAGCTTGGCGAGTTAGCTAATCAGCCAGAAGCG AACATCATCAAGTTACCGAATATCAGTGCTTCGATCCCACAATTAAAAGCCTGTATCCTTGAACTGCAGCAAAAAGGTTA CGACATTCCTAATTATCCGGATGAGCCAAAAACCGACGCTGAAAAGTCAATTAAAGCCCGTTACGACAAGATCAAAGGCA GTGCGGTAAACCCAGTACTGCGTGAAGGTAATTCAGATCGCCGCGCGCCATTATCGGTGAAAAACTTTGCCAAGAAAAAC CCGCATTCCATGGGGAAATGGGCTAAGGATTCTAAGTCACACGTTGCCCACATGACTGACGGTGATTTCTACGGCAGCGA GCAGTCTGTCACTTTATCTGATGCGGGCAGTGTGAATATCGTGCTGACGCAAAAAGATGGTCAAGAAGTGGTGCTCAAGT CGGGTCTTAAGCTGCTGGCTGGCGAAATTATCGATGCTGCGGTATTGAGTAAAAAAGCCTTAGTGAGCTTCTATGAGCGT GAAATCGAAAACGCCAAAGCTGAAGATGTGCTGTTATCGCTGCATCTCAAAGCCACTATGATGAAAGTGTCTGATCCTAT TATGTTTGGTCACGCAGTGAAGGTATTCTTTAAGCCAGTATTTGACAAACATGCGGCGCTTTTCGCTGAATTAGGCGTAG ATGTTAACAACGGTTTTGGTGATGTTTATGCCAAGATCGCGACATTACCTGCCGACAGCCGCGCCGAAGTCGAAGCCGAT ATCGCCGCCGTTTACGCTGCGCGTCCCGCATTGGCCATGGTTGATTCTGACAAAGGTATCACCAACTTACACGTGCCAAG CGACATCATTATCGATGCGTCTATGCCCGCTGCGATTCGTTCATCTGGCCAAATGTGGGGACCAGACGGTCAACTGCATG ACACTAAAGCCATGATCCCCGATCGTTGCTATGCGGGTATTTACCAAGAAACGATTGCTTTCTGTAAAGAGCACGGCGCT TTCGATCCTAAAACCATGGGCAGTGTACCCAACGTCGGCTTGATGGCGCAAAAAGCGGAAGAGTACGGCAGCCACGATAA GACCTTTGAAATTCCTGCTGACGGTGTGGTCAACGTTGTTGATGCCAGCGGTAAGGTATTGATGAGCCATAACGTGGAAG CGGGCGATATCTGGAGAATGTGTCAAGTTAAAGACGCACCTATCCGTGATTGGGTCAAACTGGCCGTGCGCCGTGCCCGT TTAAGCAATACTCCAGCGGTATTTTGGTTAGATAGCAAACGTGCCCACGATGCACAAATCATTGCTAAAGTGCAGCAGTA TCTGCCAGAGCATGATACTGATGGCTTAGAGATCAGCATTATGTCTCCTGAAGAGGCAACGCGTTTCTCTTTGGCTCGTA TCAAAGAAGGTAAAGATACGATTTCAGTTACGGGTAACGTTTTACGTGACTACCTGACTGACTTGTTCCCCATCCTCGAG CTAGGCACCAGTGCCAAAATGCTGTCAATTGTTCCATTAATGAACGGCGGCGGTCTATTTGAAACAGGTGCGGGCGGTAG TGCACCTAAACACGTGCAACAGCTTGAGAAAGAAGGTCACTTACGTTGGGATTCGCTCGGTGAATTCTTGGCTCTGGCGG CGTCTCTTGAGCATTTAAGTCAAACCGTAGGCAATCCAAAAGCCCAAGTATTGGCAGATACCTTAGATCAAGCCATTGGC CAATTCTTAGATAGCAACAAATCGCCATCAAGAAGAGTCGGTGAGCTGGATAACCGTGGCAGTCATTTCTACTTAGCCAT GTACTGGGCCCAAGCCTTAGCTGCGCAAACGGGCGATGAGCAACTACAAGCACACTTTATTCCTTTGGCGCATGCGCTGG CTGCGAATGAGCAAGTCATTGTGGCTGAATTAGCAAATGCACAAGGTGCGTCTGTCGATTTAGGCGGTTATTACCGTTTA GATGCGGCTAAGGCTGAAAAAGCCATGCGCCCAAGCGAGACGTTAAACAAACTGTTGATTGCTTAA
Upstream 100 bases:
>100_bases CGATTGCCTTGATTGATATTTTCCCTGTGCTCAGATTTGTTCGCCATGCTATAAAATTATTATAAAAAATATTAAATTTT ACAATAATGTAGGATGTAAC
Downstream 100 bases:
>100_bases TTTCGCTAGTTATCACTTTTAGATGGTGTGCGCGTCAGTGTGGGCCATCTAAGCTGATGTGAATTTGTAAGTCATTAGAC TGATTTAAAAAAGGATCTGC
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 741; Mature: 741
Protein sequence:
>741_residues MKDNSSTIIYTETDEAPALATLSLLPIIRTFTDAAGVAVETRDISLSGRIIASFPEQLTEAQKIGDHLTELGELANQPEA NIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDAEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKN PHSMGKWAKDSKSHVAHMTDGDFYGSEQSVTLSDAGSVNIVLTQKDGQEVVLKSGLKLLAGEIIDAAVLSKKALVSFYER EIENAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHAALFAELGVDVNNGFGDVYAKIATLPADSRAEVEAD IAAVYAARPALAMVDSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGQLHDTKAMIPDRCYAGIYQETIAFCKEHGA FDPKTMGSVPNVGLMAQKAEEYGSHDKTFEIPADGVVNVVDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR LSNTPAVFWLDSKRAHDAQIIAKVQQYLPEHDTDGLEISIMSPEEATRFSLARIKEGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLEKEGHLRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALAAQTGDEQLQAHFIPLAHALAANEQVIVAELANAQGASVDLGGYYRL DAAKAEKAMRPSETLNKLLIA
Sequences:
>Translated_741_residues MKDNSSTIIYTETDEAPALATLSLLPIIRTFTDAAGVAVETRDISLSGRIIASFPEQLTEAQKIGDHLTELGELANQPEA NIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDAEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKN PHSMGKWAKDSKSHVAHMTDGDFYGSEQSVTLSDAGSVNIVLTQKDGQEVVLKSGLKLLAGEIIDAAVLSKKALVSFYER EIENAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHAALFAELGVDVNNGFGDVYAKIATLPADSRAEVEAD IAAVYAARPALAMVDSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGQLHDTKAMIPDRCYAGIYQETIAFCKEHGA FDPKTMGSVPNVGLMAQKAEEYGSHDKTFEIPADGVVNVVDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR LSNTPAVFWLDSKRAHDAQIIAKVQQYLPEHDTDGLEISIMSPEEATRFSLARIKEGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLEKEGHLRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALAAQTGDEQLQAHFIPLAHALAANEQVIVAELANAQGASVDLGGYYRL DAAKAEKAMRPSETLNKLLIA >Mature_741_residues MKDNSSTIIYTETDEAPALATLSLLPIIRTFTDAAGVAVETRDISLSGRIIASFPEQLTEAQKIGDHLTELGELANQPEA NIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDAEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKN PHSMGKWAKDSKSHVAHMTDGDFYGSEQSVTLSDAGSVNIVLTQKDGQEVVLKSGLKLLAGEIIDAAVLSKKALVSFYER EIENAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHAALFAELGVDVNNGFGDVYAKIATLPADSRAEVEAD IAAVYAARPALAMVDSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGQLHDTKAMIPDRCYAGIYQETIAFCKEHGA FDPKTMGSVPNVGLMAQKAEEYGSHDKTFEIPADGVVNVVDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR LSNTPAVFWLDSKRAHDAQIIAKVQQYLPEHDTDGLEISIMSPEEATRFSLARIKEGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLEKEGHLRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALAAQTGDEQLQAHFIPLAHALAANEQVIVAELANAQGASVDLGGYYRL DAAKAEKAMRPSETLNKLLIA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80341; Mature: 80341
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDNSSTIIYTETDEAPALATLSLLPIIRTFTDAAGVAVETRDISLSGRIIASFPEQLTE CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHH AQKIGDHLTELGELANQPEANIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDA HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKNPHSMGKWAKDSKSHVAHMTD HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHCCCCCHHCCCCCCCCCCEEECCC GDFYGSEQSVTLSDAGSVNIVLTQKDGQEVVLKSGLKLLAGEIIDAAVLSKKALVSFYER CCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIENAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHAALFAELGVDVNNGFG HHHCCCHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVYAKIATLPADSRAEVEADIAAVYAARPALAMVDSDKGITNLHVPSDIIIDASMPAAIR HHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH SSGQMWGPDGQLHDTKAMIPDRCYAGIYQETIAFCKEHGAFDPKTMGSVPNVGLMAQKAE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHH EYGSHDKTFEIPADGVVNVVDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR HHCCCCCEEECCCCCEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH LSNTPAVFWLDSKRAHDAQIIAKVQQYLPEHDTDGLEISIMSPEEATRFSLARIKEGKDT CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLEKEGH EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHCCC LRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIGQFLDSNKSPSRRVGELDNRG CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC SHFYLAMYWAQALAAQTGDEQLQAHFIPLAHALAANEQVIVAELANAQGASVDLGGYYRL CEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCEEEE DAAKAEKAMRPSETLNKLLIA CHHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure MKDNSSTIIYTETDEAPALATLSLLPIIRTFTDAAGVAVETRDISLSGRIIASFPEQLTE CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHH AQKIGDHLTELGELANQPEANIIKLPNISASIPQLKACILELQQKGYDIPNYPDEPKTDA HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNFAKKNPHSMGKWAKDSKSHVAHMTD HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHCCCCCHHCCCCCCCCCCEEECCC GDFYGSEQSVTLSDAGSVNIVLTQKDGQEVVLKSGLKLLAGEIIDAAVLSKKALVSFYER CCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIENAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPVFDKHAALFAELGVDVNNGFG HHHCCCHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVYAKIATLPADSRAEVEADIAAVYAARPALAMVDSDKGITNLHVPSDIIIDASMPAAIR HHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH SSGQMWGPDGQLHDTKAMIPDRCYAGIYQETIAFCKEHGAFDPKTMGSVPNVGLMAQKAE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHH EYGSHDKTFEIPADGVVNVVDASGKVLMSHNVEAGDIWRMCQVKDAPIRDWVKLAVRRAR HHCCCCCEEECCCCCEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH LSNTPAVFWLDSKRAHDAQIIAKVQQYLPEHDTDGLEISIMSPEEATRFSLARIKEGKDT CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLEKEGH EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHCCC LRWDSLGEFLALAASLEHLSQTVGNPKAQVLADTLDQAIGQFLDSNKSPSRRVGELDNRG CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC SHFYLAMYWAQALAAQTGDEQLQAHFIPLAHALAANEQVIVAELANAQGASVDLGGYYRL CEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCEEEE DAAKAEKAMRPSETLNKLLIA CHHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]