| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598573
Identifier: 120598573
GI number: 120598573
Start: 2019487
End: 2022042
Strand: Direct
Name: 120598573
Synonym: Sputw3181_1756
Alternate gene names: NA
Gene position: 2019487-2022042 (Clockwise)
Preceding gene: 120598568
Following gene: 120598575
Centisome position: 42.89
GC content: 43.86
Gene sequence:
>2556_bases ATGAAGTCAGTGTATAAGGTTTTTCTTGTAGGATTATGTTCACTTTTCTTCGTTGCCTGTGGTGGTGGGGGCAGTATTTC CGATGATGGTGGTACAACGCCGCCTGCTGACAAGTATGTTATTAAATTAGAACTGGTTAATGTTGATGGGCAGGCCATAT CAACTATTTCAAATGCAACTCTTGGCAAGCTTATTACTACTGTGACTAAAAATGCGAGTCCACTGGTAGGTGCTCGAATT GTATTTAACTTAGAAGGACAGGGAGGCTTAACACCTGATAGTGGTGTTACTAATACTGAAGGTAAAGTGTCTATTGATGT TTTACCAGGTAATAAACTTGGCTCTGGAAGTATTACGGCTACATATGCACCAATCAGTGGAAGTGTTGTCACTTCAGTTC CAATTTCTTTCAACACTAAAGGTGATGGTGGTGACGCTGGAGGTGGCCCTCAAGTAACATTAAAGCTAACCGACGCTGCA GGAAATTCAATTAATAGCATTACATCGACAACGTCTGGCATATTGTCGGCAACGGTGACCGGACTCACTAAAACCGCGAT AGTGACTTTTGATTCCACAATTGGTGATTTGCCCGTCAAGACGGCCATTACTGATCTCAATGGTAAAGCAAGCGTTAATT TATATGCAGGTAGTACACCGGGTGCGGGGACTGCAACTGCGTCATTAAGTACGGGTGAGGTAGGGGAGCAAGTTTTTGTT GTGGGTGCTACCAATGTGTTAATGGGAAGTGGCTCGCCTTTTGTTTCGGGTAAGGCTGATGTGAGTGCATTAACCTTATC AGCAGGAGGGACTGCAACTATTTCAATCTCATTACAAGATGATCAGGGGAAAGCGTTTACTGAGCCAGTGGATGTTCGTT TTGCTTCAACCTGTTCAAATAAAGCCAGCCCTGAAGCTATAATTAGTAGCCCCGTGACCGCGGTGGGTGGGCAGGCTACA AGTACATATCTTGCCAAAGGATGTGTGGATGTTGACAATATTACGGTGACCGCGAATGTGGGTGGCAAAAACTTGTCAGC GACGGGTAGCATTACAGTGTTGTCAGCAAGTGCAGGGAGTGTCGTTTTTGTTGATGCCACGCCCGAACATATTGGTATTA AAGGGACTGGAATCAATGAGTCTTCTACTTTACGTTTTAGGGTATTAGATACCAACAATAATCCAGTCGCAAATAAAGCG GTCAGTTTTAAATTGAATAATAATTCAGCTGGATTGACGTTAACCCCCGACACCGCAACATCAAACAATCAAGGGTATGT ACAAACAGTGGTTAATTCCGGCACCGTTGCGACAACGGTAAGGGTTACGGCAAGTATTGATGGGACTAACCCATTAATTT CCAGTCAATCCAATGTACTTGTTGTTTCCACAGGTAAACCAGATCAAGACAGTTTTTCACTCTCAGCTTCCGTTTTTAAT GTTGAAGGTTGGAATTATGACGGCGCTAAGGTCACTATTACAGCCCGTCTAGCCGATGCCTTTAATAACCCTGTACCTGA TGGAACCGCTGTAGTATTTACTGCTGAGGGTGGTTCGATAGAGAGTTCTTGCCAAACACAAAAAGGGGTTTGTTCCGTGG TCTGGACAAGCCAGCAACCTCGTCCTGTGGGTGTTGATGGTAATGGACCACTTTTTGATGCAAATGGCAATCAGAACCAA GATCCTAATGCAATGCTTAGAGCCGAGACCAATTTTGCCAGTAAAACATATCTGGGAAATTATTTTGGTCAGCCCTATGG CGGTAGGGTGACTATTACTGCCACAGCCATTGGTGAGGAGTCATTTCCTGATTTAAACAGTAACAACATTCTCGATACTG ATAGTGAGTTTAGTTTATTTGTGGGAACTCCTACGAATTGTGGTCGTGATAATAGTGGGGATTGTTATGATCTTACTGAG GCATTTGTTGATCATAATGAAGATGGTATTTATACACCTAAATATCCAAAGAATGGTTCAACGGATACTTCTGGTGATCG TGAGACTTTTACCGATTTTATTGACCCAGTTAACCCGACAGGACAAGGTGTCTTTGATTTAGCCGACGGAGAGTACAGTG GTGTGTTATGTGACAATTCCGCAGCGGCATCAGTCAAATGCAGTCCGCAAGCATCCATCTCCGTACGCCGCTCACTTGTA TTAGTGATGTCAGGAAGTGATGCGATTGCCACTCGTGCTGAAAATACCTTAATTGCCGATGCTATTCCCAATAATGGGCA GATTGATATTGCGATTAAAGGCACTGCCTCCGTGATGTTTACTATCGCTGATATCAATAATCAACAAATGCCAGCTGGAA CTGTGGTGAACTTTAAAGCAACGGGCGCGACGGTGACAAGTTCAACGAGTTACACATGGCCGAGTACAAATTATAACGGT GGCCGTCAGTTTGTGGTTAGCTTAAAAGGTGGCGATCAAGCTGATTCAGGAAATCTAATTGTCACAGTTACCACTCCGGG TGTAAAAGATGCGCAGGGAGGGGATATTGCTGGAACAACAACGGAGGTATTAAATATTCCTATTCTTGTGAGATAG
Upstream 100 bases:
>100_bases GATGTAAAAATGTATAATTTTGGTGAAATTTGTGTGTTTTTACTCTATAGATTATAGGCATCTAGTTAGTATTATCATCT AAGCAACAGGGAGCCTGACA
Downstream 100 bases:
>100_bases CTCGATGTGCTAAAAACAAGGTGCTATTGGCACCTTGTTTGGATTGTTTTAAAGCACAACGCTATTTCTGGAATTGGTAG ACGCTGCCAAGTTTCATGAT
Product: Ig domain-containing protein
Products: NA
Alternate protein names: Ig Domain Domain Protein; Intimin/Invasin Family Protein; Invasin Domain-Containing Protein; Lipoprotein
Number of amino acids: Translated: 851; Mature: 851
Protein sequence:
>851_residues MKSVYKVFLVGLCSLFFVACGGGGSISDDGGTTPPADKYVIKLELVNVDGQAISTISNATLGKLITTVTKNASPLVGARI VFNLEGQGGLTPDSGVTNTEGKVSIDVLPGNKLGSGSITATYAPISGSVVTSVPISFNTKGDGGDAGGGPQVTLKLTDAA GNSINSITSTTSGILSATVTGLTKTAIVTFDSTIGDLPVKTAITDLNGKASVNLYAGSTPGAGTATASLSTGEVGEQVFV VGATNVLMGSGSPFVSGKADVSALTLSAGGTATISISLQDDQGKAFTEPVDVRFASTCSNKASPEAIISSPVTAVGGQAT STYLAKGCVDVDNITVTANVGGKNLSATGSITVLSASAGSVVFVDATPEHIGIKGTGINESSTLRFRVLDTNNNPVANKA VSFKLNNNSAGLTLTPDTATSNNQGYVQTVVNSGTVATTVRVTASIDGTNPLISSQSNVLVVSTGKPDQDSFSLSASVFN VEGWNYDGAKVTITARLADAFNNPVPDGTAVVFTAEGGSIESSCQTQKGVCSVVWTSQQPRPVGVDGNGPLFDANGNQNQ DPNAMLRAETNFASKTYLGNYFGQPYGGRVTITATAIGEESFPDLNSNNILDTDSEFSLFVGTPTNCGRDNSGDCYDLTE AFVDHNEDGIYTPKYPKNGSTDTSGDRETFTDFIDPVNPTGQGVFDLADGEYSGVLCDNSAAASVKCSPQASISVRRSLV LVMSGSDAIATRAENTLIADAIPNNGQIDIAIKGTASVMFTIADINNQQMPAGTVVNFKATGATVTSSTSYTWPSTNYNG GRQFVVSLKGGDQADSGNLIVTVTTPGVKDAQGGDIAGTTTEVLNIPILVR
Sequences:
>Translated_851_residues MKSVYKVFLVGLCSLFFVACGGGGSISDDGGTTPPADKYVIKLELVNVDGQAISTISNATLGKLITTVTKNASPLVGARI VFNLEGQGGLTPDSGVTNTEGKVSIDVLPGNKLGSGSITATYAPISGSVVTSVPISFNTKGDGGDAGGGPQVTLKLTDAA GNSINSITSTTSGILSATVTGLTKTAIVTFDSTIGDLPVKTAITDLNGKASVNLYAGSTPGAGTATASLSTGEVGEQVFV VGATNVLMGSGSPFVSGKADVSALTLSAGGTATISISLQDDQGKAFTEPVDVRFASTCSNKASPEAIISSPVTAVGGQAT STYLAKGCVDVDNITVTANVGGKNLSATGSITVLSASAGSVVFVDATPEHIGIKGTGINESSTLRFRVLDTNNNPVANKA VSFKLNNNSAGLTLTPDTATSNNQGYVQTVVNSGTVATTVRVTASIDGTNPLISSQSNVLVVSTGKPDQDSFSLSASVFN VEGWNYDGAKVTITARLADAFNNPVPDGTAVVFTAEGGSIESSCQTQKGVCSVVWTSQQPRPVGVDGNGPLFDANGNQNQ DPNAMLRAETNFASKTYLGNYFGQPYGGRVTITATAIGEESFPDLNSNNILDTDSEFSLFVGTPTNCGRDNSGDCYDLTE AFVDHNEDGIYTPKYPKNGSTDTSGDRETFTDFIDPVNPTGQGVFDLADGEYSGVLCDNSAAASVKCSPQASISVRRSLV LVMSGSDAIATRAENTLIADAIPNNGQIDIAIKGTASVMFTIADINNQQMPAGTVVNFKATGATVTSSTSYTWPSTNYNG GRQFVVSLKGGDQADSGNLIVTVTTPGVKDAQGGDIAGTTTEVLNIPILVR >Mature_851_residues MKSVYKVFLVGLCSLFFVACGGGGSISDDGGTTPPADKYVIKLELVNVDGQAISTISNATLGKLITTVTKNASPLVGARI VFNLEGQGGLTPDSGVTNTEGKVSIDVLPGNKLGSGSITATYAPISGSVVTSVPISFNTKGDGGDAGGGPQVTLKLTDAA GNSINSITSTTSGILSATVTGLTKTAIVTFDSTIGDLPVKTAITDLNGKASVNLYAGSTPGAGTATASLSTGEVGEQVFV VGATNVLMGSGSPFVSGKADVSALTLSAGGTATISISLQDDQGKAFTEPVDVRFASTCSNKASPEAIISSPVTAVGGQAT STYLAKGCVDVDNITVTANVGGKNLSATGSITVLSASAGSVVFVDATPEHIGIKGTGINESSTLRFRVLDTNNNPVANKA VSFKLNNNSAGLTLTPDTATSNNQGYVQTVVNSGTVATTVRVTASIDGTNPLISSQSNVLVVSTGKPDQDSFSLSASVFN VEGWNYDGAKVTITARLADAFNNPVPDGTAVVFTAEGGSIESSCQTQKGVCSVVWTSQQPRPVGVDGNGPLFDANGNQNQ DPNAMLRAETNFASKTYLGNYFGQPYGGRVTITATAIGEESFPDLNSNNILDTDSEFSLFVGTPTNCGRDNSGDCYDLTE AFVDHNEDGIYTPKYPKNGSTDTSGDRETFTDFIDPVNPTGQGVFDLADGEYSGVLCDNSAAASVKCSPQASISVRRSLV LVMSGSDAIATRAENTLIADAIPNNGQIDIAIKGTASVMFTIADINNQQMPAGTVVNFKATGATVTSSTSYTWPSTNYNG GRQFVVSLKGGDQADSGNLIVTVTTPGVKDAQGGDIAGTTTEVLNIPILVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86712; Mature: 86712
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51127 BIG1 L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSVYKVFLVGLCSLFFVACGGGGSISDDGGTTPPADKYVIKLELVNVDGQAISTISNAT CCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHCCCH LGKLITTVTKNASPLVGARIVFNLEGQGGLTPDSGVTNTEGKVSIDVLPGNKLGSGSITA HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEE TYAPISGSVVTSVPISFNTKGDGGDAGGGPQVTLKLTDAAGNSINSITSTTSGILSATVT EECCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCHHHHEEEC GLTKTAIVTFDSTIGDLPVKTAITDLNGKASVNLYAGSTPGAGTATASLSTGEVGEQVFV CCEEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEE VGATNVLMGSGSPFVSGKADVSALTLSAGGTATISISLQDDQGKAFTEPVDVRFASTCSN EEECEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCEECCCEEEEEEECCCC KASPEAIISSPVTAVGGQATSTYLAKGCVDVDNITVTANVGGKNLSATGSITVLSASAGS CCCCHHHHCCCCHHCCCCCHHHHHHHCCEEECCEEEEEECCCCCEECCCEEEEEEECCCC VVFVDATPEHIGIKGTGINESSTLRFRVLDTNNNPVANKAVSFKLNNNSAGLTLTPDTAT EEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCEEECCCCCC SNNQGYVQTVVNSGTVATTVRVTASIDGTNPLISSQSNVLVVSTGKPDQDSFSLSASVFN CCCCCEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEE VEGWNYDGAKVTITARLADAFNNPVPDGTAVVFTAEGGSIESSCQTQKGVCSVVWTSQQP ECCCCCCCCEEEEEEEEHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCC RPVGVDGNGPLFDANGNQNQDPNAMLRAETNFASKTYLGNYFGQPYGGRVTITATAIGEE CEEECCCCCCEECCCCCCCCCCCEEEEEECCCCCCEEHHHHCCCCCCCEEEEEEEECCCC SFPDLNSNNILDTDSEFSLFVGTPTNCGRDNSGDCYDLTEAFVDHNEDGIYTPKYPKNGS CCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCC TDTSGDRETFTDFIDPVNPTGQGVFDLADGEYSGVLCDNSAAASVKCSPQASISVRRSLV CCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEECCCCCEEEEEEEE LVMSGSDAIATRAENTLIADAIPNNGQIDIAIKGTASVMFTIADINNQQMPAGTVVNFKA EEEECCCCEEECCCCEEEEECCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEE TGATVTSSTSYTWPSTNYNGGRQFVVSLKGGDQADSGNLIVTVTTPGVKDAQGGDIAGTT CCCEEECCCEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCE TEVLNIPILVR EHEEEEEEEEC >Mature Secondary Structure MKSVYKVFLVGLCSLFFVACGGGGSISDDGGTTPPADKYVIKLELVNVDGQAISTISNAT CCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHCCCH LGKLITTVTKNASPLVGARIVFNLEGQGGLTPDSGVTNTEGKVSIDVLPGNKLGSGSITA HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEE TYAPISGSVVTSVPISFNTKGDGGDAGGGPQVTLKLTDAAGNSINSITSTTSGILSATVT EECCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCHHHHEEEC GLTKTAIVTFDSTIGDLPVKTAITDLNGKASVNLYAGSTPGAGTATASLSTGEVGEQVFV CCEEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEE VGATNVLMGSGSPFVSGKADVSALTLSAGGTATISISLQDDQGKAFTEPVDVRFASTCSN EEECEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCEECCCEEEEEEECCCC KASPEAIISSPVTAVGGQATSTYLAKGCVDVDNITVTANVGGKNLSATGSITVLSASAGS CCCCHHHHCCCCHHCCCCCHHHHHHHCCEEECCEEEEEECCCCCEECCCEEEEEEECCCC VVFVDATPEHIGIKGTGINESSTLRFRVLDTNNNPVANKAVSFKLNNNSAGLTLTPDTAT EEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCEEECCCCCC SNNQGYVQTVVNSGTVATTVRVTASIDGTNPLISSQSNVLVVSTGKPDQDSFSLSASVFN CCCCCEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEE VEGWNYDGAKVTITARLADAFNNPVPDGTAVVFTAEGGSIESSCQTQKGVCSVVWTSQQP ECCCCCCCCEEEEEEEEHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCC RPVGVDGNGPLFDANGNQNQDPNAMLRAETNFASKTYLGNYFGQPYGGRVTITATAIGEE CEEECCCCCCEECCCCCCCCCCCEEEEEECCCCCCEEHHHHCCCCCCCEEEEEEEECCCC SFPDLNSNNILDTDSEFSLFVGTPTNCGRDNSGDCYDLTEAFVDHNEDGIYTPKYPKNGS CCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCC TDTSGDRETFTDFIDPVNPTGQGVFDLADGEYSGVLCDNSAAASVKCSPQASISVRRSLV CCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEECCCCCEEEEEEEE LVMSGSDAIATRAENTLIADAIPNNGQIDIAIKGTASVMFTIADINNQQMPAGTVVNFKA EEEECCCCEEECCCCEEEEECCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEE TGATVTSSTSYTWPSTNYNGGRQFVVSLKGGDQADSGNLIVTVTTPGVKDAQGGDIAGTT CCCEEECCCEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCE TEVLNIPILVR EHEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA