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The map label for this gene is slyD [H]

Identifier: 120598510

GI number: 120598510

Start: 1950091

End: 1950582

Strand: Direct

Name: slyD [H]

Synonym: Sputw3181_1693

Alternate gene names: 120598510

Gene position: 1950091-1950582 (Clockwise)

Preceding gene: 120598509

Following gene: 120598512

Centisome position: 41.42

GC content: 48.78

Gene sequence:

>492_bases
ATGAGCATTATTAAAGACGACATGGTTGTGCAGTTTAACTACACTCTGCGCGATGAGAAAGGTGATGTGATTGAGACCAA
CGAAGGCCGTGAAGCCATTGCCTATTTACATGGCCATGACAATATGATGCCAGGTGTTGAAAATGCCATTAATGGCAAAG
CTGTTGGTGACAAGTTTACCGTGACTTTACCTGCGTCGGAAACCTACGGTGAGCGCGTTGAAGGAGACGCTGCGCAACAA
CGAGTGTCTGTGAAACACCTATTAGGCGCCAGCGTGTGGAAGCCAGGTATGACGGCTGTGGTACACACTGACCACGGTCA
ACGTCAAGTCACTATCGTTAAAGTAGGTAAATTTATGGCGACTGTGGATGTGAACCATCCCTTAGCGGGCCGTGATTTAA
CCTTCGATATCGAAATTGTCGGTGCTCGCGATGCCTCTGATGAAGAAATCGCCCATGGTCATGCCCATGGTGCTGGTGGT
CATCACCACTAA

Upstream 100 bases:

>100_bases
GCAGATGTGCAGTGCAGTCGGGATAAAAATGTGGAGTGAAAAGGTCAGTTTTGTTAAGCTCGCCTCACATTTGAAATCGA
AGTAAATCAAAGGATATTCG

Downstream 100 bases:

>100_bases
TTTTTAGGATTTGAAACTTGGTTTTGTTCCTCGATTGAAGATGAGTAAAACGGGTATGCAATCTTGAAGTTAAAAGCCCA
AACCTGTTGGTTTGGGCTTT

Product: peptidylprolyl isomerase, FKBP-type

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSIIKDDMVVQFNYTLRDEKGDVIETNEGREAIAYLHGHDNMMPGVENAINGKAVGDKFTVTLPASETYGERVEGDAAQQ
RVSVKHLLGASVWKPGMTAVVHTDHGQRQVTIVKVGKFMATVDVNHPLAGRDLTFDIEIVGARDASDEEIAHGHAHGAGG
HHH

Sequences:

>Translated_163_residues
MSIIKDDMVVQFNYTLRDEKGDVIETNEGREAIAYLHGHDNMMPGVENAINGKAVGDKFTVTLPASETYGERVEGDAAQQ
RVSVKHLLGASVWKPGMTAVVHTDHGQRQVTIVKVGKFMATVDVNHPLAGRDLTFDIEIVGARDASDEEIAHGHAHGAGG
HHH
>Mature_162_residues
SIIKDDMVVQFNYTLRDEKGDVIETNEGREAIAYLHGHDNMMPGVENAINGKAVGDKFTVTLPASETYGERVEGDAAQQR
VSVKHLLGASVWKPGMTAVVHTDHGQRQVTIVKVGKFMATVDVNHPLAGRDLTFDIEIVGARDASDEEIAHGHAHGAGGH
HH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=150, Percent_Identity=37.3333333333333, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 17670; Mature: 17539

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIIKDDMVVQFNYTLRDEKGDVIETNEGREAIAYLHGHDNMMPGVENAINGKAVGDKFT
CCCCCCCEEEEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEE
VTLPASETYGERVEGDAAQQRVSVKHLLGASVWKPGMTAVVHTDHGQRQVTIVKVGKFMA
EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCEEE
TVDVNHPLAGRDLTFDIEIVGARDASDEEIAHGHAHGAGGHHH
EEECCCCCCCCCEEEEEEEEECCCCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SIIKDDMVVQFNYTLRDEKGDVIETNEGREAIAYLHGHDNMMPGVENAINGKAVGDKFT
CCCCCCEEEEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEE
VTLPASETYGERVEGDAAQQRVSVKHLLGASVWKPGMTAVVHTDHGQRQVTIVKVGKFMA
EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCEEE
TVDVNHPLAGRDLTFDIEIVGARDASDEEIAHGHAHGAGGHHH
EEECCCCCCCCCEEEEEEEEECCCCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]