Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120598494

Identifier: 120598494

GI number: 120598494

Start: 1936130

End: 1936507

Strand: Direct

Name: 120598494

Synonym: Sputw3181_1677

Alternate gene names: NA

Gene position: 1936130-1936507 (Clockwise)

Preceding gene: 120598493

Following gene: 120598496

Centisome position: 41.12

GC content: 40.48

Gene sequence:

>378_bases
ATGCTGACAATTTCTTCTAGCGATGCCGACAATATTATTACTGTTATTGCGTCTGGGTGGATTAATCATCTCGATATTGA
ATCCCAACTATTACCTTCAATTGAAGCAAAACTTCAAGATCATGCCACAATACGATTGTGGTATGAGTTTAGCTCTGAGT
TTGAAGGGATATCTGTGGGGGCCCTTTGGGATGATGCCATGCTCAGCTTATTTCATTTAAGCGATTTTTCCCGTGTAGTG
ATGATTGCTGATATGAAAAAGCTCGATGCAATGGTAAATGCTTTAGCGTTTATGTTGCCTTGCCCGGTTAAGATTTTTGC
TATGAATGAGCGGGATCGAGCTAGAGTCTGGTTAGATGAAGTAGTGGCGATTGAATAA

Upstream 100 bases:

>100_bases
AGGGTTAGTTTCTTTTGTTTTCTGTGCAACTATATCCCATATTTATGAGTTTTTAGTTGATGCTGAAAATGGGATGTTGG
GTGTATTGAAAAGGTGAGAC

Downstream 100 bases:

>100_bases
CACATTGTCAAAAAGTGTTTATGAAAAATCCAACTGACAGACACCTGATAATACGGTGCTGCCAGTGTAATGGATGCAGC
TTGACTCATTGAGTTTAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MLTISSSDADNIITVIASGWINHLDIESQLLPSIEAKLQDHATIRLWYEFSSEFEGISVGALWDDAMLSLFHLSDFSRVV
MIADMKKLDAMVNALAFMLPCPVKIFAMNERDRARVWLDEVVAIE

Sequences:

>Translated_125_residues
MLTISSSDADNIITVIASGWINHLDIESQLLPSIEAKLQDHATIRLWYEFSSEFEGISVGALWDDAMLSLFHLSDFSRVV
MIADMKKLDAMVNALAFMLPCPVKIFAMNERDRARVWLDEVVAIE
>Mature_125_residues
MLTISSSDADNIITVIASGWINHLDIESQLLPSIEAKLQDHATIRLWYEFSSEFEGISVGALWDDAMLSLFHLSDFSRVV
MIADMKKLDAMVNALAFMLPCPVKIFAMNERDRARVWLDEVVAIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14116; Mature: 14116

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTISSSDADNIITVIASGWINHLDIESQLLPSIEAKLQDHATIRLWYEFSSEFEGISVG
CEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEE
ALWDDAMLSLFHLSDFSRVVMIADMKKLDAMVNALAFMLPCPVKIFAMNERDRARVWLDE
CCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
VVAIE
HEECC
>Mature Secondary Structure
MLTISSSDADNIITVIASGWINHLDIESQLLPSIEAKLQDHATIRLWYEFSSEFEGISVG
CEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEE
ALWDDAMLSLFHLSDFSRVVMIADMKKLDAMVNALAFMLPCPVKIFAMNERDRARVWLDE
CCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
VVAIE
HEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA