| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yfbO [C]
Identifier: 120598406
GI number: 120598406
Start: 1812734
End: 1813171
Strand: Direct
Name: yfbO [C]
Synonym: Sputw3181_1589
Alternate gene names: 120598406
Gene position: 1812734-1813171 (Clockwise)
Preceding gene: 120598405
Following gene: 120598423
Centisome position: 38.5
GC content: 48.86
Gene sequence:
>438_bases GTGACAACGAGAACGGAATTACTCAATAAATTAAGCGCCTTATTGGTCGCAGATCCAGAGAACAGTCCGGTAGTGACATT AGATGAGTTCTTTTTAGCAAACGAAGATGAAGAGTCCATCGCGCCCAATAATTGGGGCTATGGTCGACCATCTATCAAAG AAATCTATCGCAGCTTGAAAGAAATCGAACATAGGCCTGATGTGCAGGGGGTCTTTGTTGGTATGCACGATGAATGGTCC GAAGCCCTTGAGGATGATGAGCTATGGCCCGCAGCCGAGAACATTCATATCCTCTCCTGTGCGCCTGAGGTCGAAGTGGA AGCCTGGATTGCAGGAATCGCGGCAGATGGGCTCGGTACTGGCTGGCCCTATGGCGAACATAAACTTTCCCCTATGCCTC AAGATGGCTATCTTGTCTATACCGTGTATTGGGACTAG
Upstream 100 bases:
>100_bases ATACTGTCAGGCCAACATCAGGTCTAGTCTTTGGCCCTGTGTACGTGATAAGTGAGTTAAAGGTTTACAGGAAACAAGCC TTAGAAATGGAGTATTATCA
Downstream 100 bases:
>100_bases TGGATTTCTATATCACCTGTAGAGTTTGAAACTTCTCAACTTAAAGTGTCCAATTTGGGGTGACCAGTACACAAACAAAA ACATCGGCCTAAGCCGATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MTTRTELLNKLSALLVADPENSPVVTLDEFFLANEDEESIAPNNWGYGRPSIKEIYRSLKEIEHRPDVQGVFVGMHDEWS EALEDDELWPAAENIHILSCAPEVEVEAWIAGIAADGLGTGWPYGEHKLSPMPQDGYLVYTVYWD
Sequences:
>Translated_145_residues MTTRTELLNKLSALLVADPENSPVVTLDEFFLANEDEESIAPNNWGYGRPSIKEIYRSLKEIEHRPDVQGVFVGMHDEWS EALEDDELWPAAENIHILSCAPEVEVEAWIAGIAADGLGTGWPYGEHKLSPMPQDGYLVYTVYWD >Mature_144_residues TTRTELLNKLSALLVADPENSPVVTLDEFFLANEDEESIAPNNWGYGRPSIKEIYRSLKEIEHRPDVQGVFVGMHDEWSE ALEDDELWPAAENIHILSCAPEVEVEAWIAGIAADGLGTGWPYGEHKLSPMPQDGYLVYTVYWD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16333; Mature: 16202
Theoretical pI: Translated: 3.92; Mature: 3.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRTELLNKLSALLVADPENSPVVTLDEFFLANEDEESIAPNNWGYGRPSIKEIYRSLK CCCHHHHHHHHHEEEEECCCCCCEEEEHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH EIEHRPDVQGVFVGMHDEWSEALEDDELWPAAENIHILSCAPEVEVEAWIAGIAADGLGT HHHCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC GWPYGEHKLSPMPQDGYLVYTVYWD CCCCCCCCCCCCCCCCEEEEEEEEC >Mature Secondary Structure TTRTELLNKLSALLVADPENSPVVTLDEFFLANEDEESIAPNNWGYGRPSIKEIYRSLK CCHHHHHHHHHEEEEECCCCCCEEEEHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH EIEHRPDVQGVFVGMHDEWSEALEDDELWPAAENIHILSCAPEVEVEAWIAGIAADGLGT HHHCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC GWPYGEHKLSPMPQDGYLVYTVYWD CCCCCCCCCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA