Click here to switch to the map view.

The map label for this gene is yeeY [H]

Identifier: 120598172

GI number: 120598172

Start: 1527359

End: 1528252

Strand: Direct

Name: yeeY [H]

Synonym: Sputw3181_1349

Alternate gene names: 120598172

Gene position: 1527359-1528252 (Clockwise)

Preceding gene: 120598169

Following gene: 120598175

Centisome position: 32.44

GC content: 45.75

Gene sequence:

>894_bases
ATGTTGCCAGCCATTAGCCTTGATGGATTAATTGTGCTCGATGCGATTGATAAAAAAGGGAGTTTTTCAGCCGCGGCAGA
ATCGTTATTTCGAGTACCTTCTGCCTTAACCTATACAGTACAGAAACTTGAAGGCGATTTAGGTGTAAAACTATTTGAAC
GTAAGGGACAAAGAGCTGAACTGACACTAGTCGGTCAATTAGTATTGCGTCAAGGTCGGGAGATCCTTGCTGCCACATCA
AGGCTTGAAGAGGCGGTACGCCAATTGGAAACGGGCTGGGAGTCTTCCTTAACCTTAGCGATAGATACTGTTGTACCGAT
TTCTCCTTTATTGCAGCTTATTGGTGAGTTTACGGAGTTGGGTAAACAAGTCACGGTAAATATTAGTGAAGAGTCCTTAG
GTGGAGGTTGGGACGCGCTCTATTCAGGGCGAGCTGATATTGCTATCGGCGTTACTGGGGAACTGCCAAAAGGACAATAT
CATTTGGTTGAAATTGGCCATCTTGAGTTTGTATTTGCACTTAATCCAACCCATCCCTTGGCTTTGTATAAGTTGCCGAT
ACCGACTGAGGCGCTGTTACAGTTTCCATCTATAGTGGTTGCGGATAGTTCTATGGCATTAGCACAGCGTTCAAGTGGTT
TATTCGATAGTCGACAAGTGATTCGAGTACCCAATATGCAAACTAAGATTAAAGCGCAGCAATTAGGCTTAGGCGTCGGA
TATATTCCTGCGCACCTTATTACTAAAGAACTGGCATCGGGTGATTTGATTGCCTGTGCAGTCGAGATCCCCCGCCCCGC
ACAGAAGGTATTTTTGGCATGGCGCAAGGGCAATCAAGGTAAGGCGCAAGCTTGGTTTGCCGAGCGGTTACCCCATTGTG
AATGGCTGTTTTAA

Upstream 100 bases:

>100_bases
TTGAACCTCTCCATTGCTAAACAGTTTAGACTTGACCTTAGGCAAAGAAAATCGGAACATTTTCAATATTAATTTCAAAT
AATTTGAACAAGAGGCGCTT

Downstream 100 bases:

>100_bases
TTTAATATGTCAGGTTAGACAGCTTAGTGCTATCCAGAACGTCTTAAATGGCTAGTGTAGTGAACATGTGGCGATAAAAA
GTCCGCTAAATTAGGTGATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MLPAISLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLEGDLGVKLFERKGQRAELTLVGQLVLRQGREILAATS
RLEEAVRQLETGWESSLTLAIDTVVPISPLLQLIGEFTELGKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQY
HLVEIGHLEFVFALNPTHPLALYKLPIPTEALLQFPSIVVADSSMALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YIPAHLITKELASGDLIACAVEIPRPAQKVFLAWRKGNQGKAQAWFAERLPHCEWLF

Sequences:

>Translated_297_residues
MLPAISLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLEGDLGVKLFERKGQRAELTLVGQLVLRQGREILAATS
RLEEAVRQLETGWESSLTLAIDTVVPISPLLQLIGEFTELGKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQY
HLVEIGHLEFVFALNPTHPLALYKLPIPTEALLQFPSIVVADSSMALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YIPAHLITKELASGDLIACAVEIPRPAQKVFLAWRKGNQGKAQAWFAERLPHCEWLF
>Mature_297_residues
MLPAISLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLEGDLGVKLFERKGQRAELTLVGQLVLRQGREILAATS
RLEEAVRQLETGWESSLTLAIDTVVPISPLLQLIGEFTELGKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQY
HLVEIGHLEFVFALNPTHPLALYKLPIPTEALLQFPSIVVADSSMALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YIPAHLITKELASGDLIACAVEIPRPAQKVFLAWRKGNQGKAQAWFAERLPHCEWLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=285, Percent_Identity=38.9473684210526, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1787949, Length=287, Percent_Identity=34.4947735191638, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789492, Length=289, Percent_Identity=33.5640138408304, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1786713, Length=271, Percent_Identity=30.9963099630996, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1786508, Length=291, Percent_Identity=28.1786941580756, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI145693105, Length=230, Percent_Identity=25.2173913043478, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=25.3968253968254, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790262, Length=196, Percent_Identity=28.0612244897959, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081904, Length=267, Percent_Identity=27.3408239700375, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32331; Mature: 32331

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPAISLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLEGDLGVKLFERKGQRAE
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHCCCCEEE
LTLVGQLVLRQGREILAATSRLEEAVRQLETGWESSLTLAIDTVVPISPLLQLIGEFTEL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHC
GKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQYHLVEIGHLEFVFALNPTHPL
CCEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEECCCCCE
ALYKLPIPTEALLQFPSIVVADSSMALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
EEEECCCCHHHHHHCCCEEEECCHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCC
YIPAHLITKELASGDLIACAVEIPRPAQKVFLAWRKGNQGKAQAWFAERLPHCEWLF
HHHHHHHHHHHCCCCEEEEEEECCCCHHHEEEEEECCCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLPAISLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLEGDLGVKLFERKGQRAE
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHCCCCEEE
LTLVGQLVLRQGREILAATSRLEEAVRQLETGWESSLTLAIDTVVPISPLLQLIGEFTEL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHC
GKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQYHLVEIGHLEFVFALNPTHPL
CCEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEECCCCCE
ALYKLPIPTEALLQFPSIVVADSSMALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
EEEECCCCHHHHHHCCCEEEECCHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCC
YIPAHLITKELASGDLIACAVEIPRPAQKVFLAWRKGNQGKAQAWFAERLPHCEWLF
HHHHHHHHHHHCCCCEEEEEEECCCCHHHEEEEEECCCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]