Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120598072

Identifier: 120598072

GI number: 120598072

Start: 1419801

End: 1420775

Strand: Direct

Name: 120598072

Synonym: Sputw3181_1249

Alternate gene names: NA

Gene position: 1419801-1420775 (Clockwise)

Preceding gene: 120598070

Following gene: 120598073

Centisome position: 30.15

GC content: 38.87

Gene sequence:

>975_bases
ATGAATAAGCATTTTACATTTACGATTAACAGCATTTGTCTTGATGAAAATTATCATCCCTCAGACAAGACGCGTATCAC
GACCAACTTTGCTAATTTGGCCAGAGGCAGTCATCGCCAAGCGAACTTACGCAACGCGTTAAAGATGATTGATAACAGTT
TTAATGCCTTAGCGCATTGGGATAACCCTAAAGGCGATCGTTATTCTGTCGAACTTGAAATTATCTCCGTTAATTTGGAT
ATTGACGGCAGCGGTCAAACCTTCCCATCGATTGAAGTATTGAAAACCAATATTGTTGATCATAAAACCAATAAACGTAT
TGAAGGCATTGTCGGCAATAACTTTTCATCTTACGTACGCGATTATGACTTTAGCGTATTACTGGCAGAACATAATAAGG
GCCAAGCCAAATTTAGTATTCCAGATGATTTTGGTGGACTACATGGCAAGCTATTTCAGTCTTTTGTTAATTCTGATGCT
TACAAACAGAATTTTAATAAGCCACCGGTTATCTGCCTCAGTGTGTCGGATAATAAAACCTACCATAGAATTGAGAATCA
GCATCCCGTATTAGGGGTTGAATATCAACCAAATGAATCGTCTTTAACTGAGCAATATTTCAAAAAAATGGGCTTACAGG
TGCGCTATTTTATGCCGCCAAATAGCGTGGCGCCGTTAGCTTTTTATTTCTTTGGTGATTTGCTCAATGATTACACCCAT
CTTGAGTTGATAAGCACCATCAGCACTATGGGAACTTTTCAAAAAATCTATCGCCCTGAGATTTATAACGCCAATGCTGT
TGCAGGGAAATGCTATCAACCTAATTTGAAAAATCTGGATCATTCACTGACTCAAATTGTTTATGACCGAGCAGAACGTA
GCCAATTGGCGAATGAGCAAGGCAAATTTGCAGCGGAGCACTTTATCAAACCCTATCAAACGTTTTTTGAACAATGGCCT
GCTAATTACCTTTAG

Upstream 100 bases:

>100_bases
AGACAGAACACGAATAATGTCGATCAGAGTCGGGTCTAGAAGCTAGAAGAACAGGGCATAAACTCAGGTTTGAAATCAGA
CAATGGGATACTGGATCACT

Downstream 100 bases:

>100_bases
TCGCTCTGCGCCTAATCGTCACGCTCAATAATTAATCCAATACGGCATCATTATCATGAAAACACGACTTAATAAAACAT
CGCTTAACCAGGCACTGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHWDNPKGDRYSVELEIISVNLD
IDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVRDYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDA
YKQNFNKPPVICLSVSDNKTYHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH
LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQGKFAAEHFIKPYQTFFEQWP
ANYL

Sequences:

>Translated_324_residues
MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHWDNPKGDRYSVELEIISVNLD
IDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVRDYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDA
YKQNFNKPPVICLSVSDNKTYHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH
LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQGKFAAEHFIKPYQTFFEQWP
ANYL
>Mature_324_residues
MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHWDNPKGDRYSVELEIISVNLD
IDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVRDYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDA
YKQNFNKPPVICLSVSDNKTYHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH
LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQGKFAAEHFIKPYQTFFEQWP
ANYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37194; Mature: 37194

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHW
CCCEEEEEEEEEEECCCCCCCCCCEEEECHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEC
DNPKGDRYSVELEIISVNLDIDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVR
CCCCCCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHH
DYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDAYKQNFNKPPVICLSVSDNKT
CCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCH
YHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH
HHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHH
LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GKFAAEHFIKPYQTFFEQWPANYL
CCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHW
CCCEEEEEEEEEEECCCCCCCCCCEEEECHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEC
DNPKGDRYSVELEIISVNLDIDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVR
CCCCCCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHH
DYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDAYKQNFNKPPVICLSVSDNKT
CCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCH
YHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH
HHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHH
LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GKFAAEHFIKPYQTFFEQWPANYL
CCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA