| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120598072
Identifier: 120598072
GI number: 120598072
Start: 1419801
End: 1420775
Strand: Direct
Name: 120598072
Synonym: Sputw3181_1249
Alternate gene names: NA
Gene position: 1419801-1420775 (Clockwise)
Preceding gene: 120598070
Following gene: 120598073
Centisome position: 30.15
GC content: 38.87
Gene sequence:
>975_bases ATGAATAAGCATTTTACATTTACGATTAACAGCATTTGTCTTGATGAAAATTATCATCCCTCAGACAAGACGCGTATCAC GACCAACTTTGCTAATTTGGCCAGAGGCAGTCATCGCCAAGCGAACTTACGCAACGCGTTAAAGATGATTGATAACAGTT TTAATGCCTTAGCGCATTGGGATAACCCTAAAGGCGATCGTTATTCTGTCGAACTTGAAATTATCTCCGTTAATTTGGAT ATTGACGGCAGCGGTCAAACCTTCCCATCGATTGAAGTATTGAAAACCAATATTGTTGATCATAAAACCAATAAACGTAT TGAAGGCATTGTCGGCAATAACTTTTCATCTTACGTACGCGATTATGACTTTAGCGTATTACTGGCAGAACATAATAAGG GCCAAGCCAAATTTAGTATTCCAGATGATTTTGGTGGACTACATGGCAAGCTATTTCAGTCTTTTGTTAATTCTGATGCT TACAAACAGAATTTTAATAAGCCACCGGTTATCTGCCTCAGTGTGTCGGATAATAAAACCTACCATAGAATTGAGAATCA GCATCCCGTATTAGGGGTTGAATATCAACCAAATGAATCGTCTTTAACTGAGCAATATTTCAAAAAAATGGGCTTACAGG TGCGCTATTTTATGCCGCCAAATAGCGTGGCGCCGTTAGCTTTTTATTTCTTTGGTGATTTGCTCAATGATTACACCCAT CTTGAGTTGATAAGCACCATCAGCACTATGGGAACTTTTCAAAAAATCTATCGCCCTGAGATTTATAACGCCAATGCTGT TGCAGGGAAATGCTATCAACCTAATTTGAAAAATCTGGATCATTCACTGACTCAAATTGTTTATGACCGAGCAGAACGTA GCCAATTGGCGAATGAGCAAGGCAAATTTGCAGCGGAGCACTTTATCAAACCCTATCAAACGTTTTTTGAACAATGGCCT GCTAATTACCTTTAG
Upstream 100 bases:
>100_bases AGACAGAACACGAATAATGTCGATCAGAGTCGGGTCTAGAAGCTAGAAGAACAGGGCATAAACTCAGGTTTGAAATCAGA CAATGGGATACTGGATCACT
Downstream 100 bases:
>100_bases TCGCTCTGCGCCTAATCGTCACGCTCAATAATTAATCCAATACGGCATCATTATCATGAAAACACGACTTAATAAAACAT CGCTTAACCAGGCACTGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHWDNPKGDRYSVELEIISVNLD IDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVRDYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDA YKQNFNKPPVICLSVSDNKTYHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQGKFAAEHFIKPYQTFFEQWP ANYL
Sequences:
>Translated_324_residues MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHWDNPKGDRYSVELEIISVNLD IDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVRDYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDA YKQNFNKPPVICLSVSDNKTYHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQGKFAAEHFIKPYQTFFEQWP ANYL >Mature_324_residues MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHWDNPKGDRYSVELEIISVNLD IDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVRDYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDA YKQNFNKPPVICLSVSDNKTYHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQGKFAAEHFIKPYQTFFEQWP ANYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37194; Mature: 37194
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHW CCCEEEEEEEEEEECCCCCCCCCCEEEECHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEC DNPKGDRYSVELEIISVNLDIDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVR CCCCCCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHH DYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDAYKQNFNKPPVICLSVSDNKT CCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCH YHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH HHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHH LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQ HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GKFAAEHFIKPYQTFFEQWPANYL CCHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNKHFTFTINSICLDENYHPSDKTRITTNFANLARGSHRQANLRNALKMIDNSFNALAHW CCCEEEEEEEEEEECCCCCCCCCCEEEECHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEC DNPKGDRYSVELEIISVNLDIDGSGQTFPSIEVLKTNIVDHKTNKRIEGIVGNNFSSYVR CCCCCCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHH DYDFSVLLAEHNKGQAKFSIPDDFGGLHGKLFQSFVNSDAYKQNFNKPPVICLSVSDNKT CCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCH YHRIENQHPVLGVEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLLNDYTH HHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHH LELISTISTMGTFQKIYRPEIYNANAVAGKCYQPNLKNLDHSLTQIVYDRAERSQLANEQ HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GKFAAEHFIKPYQTFFEQWPANYL CCHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA