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The map label for this gene is yciR [C]

Identifier: 120598035

GI number: 120598035

Start: 1369339

End: 1370835

Strand: Direct

Name: yciR [C]

Synonym: Sputw3181_1212

Alternate gene names: 120598035

Gene position: 1369339-1370835 (Clockwise)

Preceding gene: 120598034

Following gene: 120598037

Centisome position: 29.08

GC content: 41.88

Gene sequence:

>1497_bases
ATGATCAGGATGGAATTTATCGCTATAGCATTGCTTATTATCCTGATAGGCGTGCTATATATTCTGCTGGCAAAATATCA
CTCGCAACGTCTGCAACAACGGTTTTTGGCTCAACTATGTTGTCAACTTGATCAGCAAAAGATTGAGCGTCGGCCCCTTA
ACATTTCTGCGGTTCCCCAAGAGTTTGCACCGCTTTATGATTCCTTAAATGAGATGCTAACCGCTCTGCCTGCTGGAATG
GGTAAAGATAAGCTTACTGGGCTGAGTAATCGAGTGGGCCTAAAACGTACTTTAGCCACTATGATGCCGCTTACTCGAGG
GACTATGGTTTTAGTTGATATTTATCGCTTTCGCTATGTTAATGATCTCTTTGGTTTTGTCTTTGGTGATATTTTACTCA
AGCAGTTTGCTGAGCGTTTATATTCCCTAAGCCTTAATCCTAGATTCATTGCTCGTTTAAACGGTGATGAATTTTTTCTT
TACTATGACCAAAACCTGACGGAAGAACAATTACTGCATTTACGTGGTCGTTTACAAGTGCCTTTTCGTATCAATGATAC
GCCAGTGAGTGTTCGTGTGCAGATAGGATGTTTGCAGCTTCAATCACATCATGCTGATGCAAGCCAAATGTTACGAAGGC
TCGATCTTGCCCTTAAAAAAGCGCGTATAACACGCAGTGCTATTGCCTGTTACAGTGAGAATGATGATATAAGGCAACTG
CGAGAACTCAAAATTATTGATAGTCTTCCTAAAGGGTTACAGCAAAATCATTTATATATGGTGTACCAACCTAAGCAAAA
TATACAAACGGGGTTGTGTACCCAAGTCGAAGCCTTAATACGTTGGCAGCATGAGGAGCTTGGGACTATCTCTCCTGGAG
AATTTATTCCTCTGGCTGAATATGCCGGAATGATTGACTTGGTGAGTCAATGGGCCCTTGAACAGGTTTTAGCTCAACAG
GCAAAATGGCGTACCGCGGGGATTAATTTATGTGTAGCGGTTAACCTTTCTACACGGGATCTAGACAGTGAAACCTTACC
CCAAGAAATTGCATCGCGCCTTGCTTATTATCATTTACCTCCCGAATCTTTAATGATTGAAATTACGGAAAGTACGCTGA
TGGCTGACTTAAATAAAGCCGTAGAAACCCTAGATAAAATTCGTGCGTTAGGGGTTAGTCTCGCGATTGATGATTTTGGT
ACGGGCCATTCTTCTTTGGCTTATTTAAAGCATTTGCCTGTCAATGAAGTCAAAATTGATAAAGCCTTTTTACAGGATCT
TGAACGGGATAAGGCATCTGAATATATCCTCGAAGCCAGTATCAATATCGCCAAAAAATTAGGTTATCAAGTGACTGTCG
AAGGTATTGAAACGCTCGAGATTAGGGATAGGTTAGTGGCGATGGGCGTTGATACCCTGCAAGGTTTATATTACGCAAAG
CCCATGAGTGCTGCTGAGCTTGAAATGAACTGGGCACAGTTGCATTATGCGACGTAA

Upstream 100 bases:

>100_bases
GCGGATGCGTTAGCCAGTGATGAGTTTATGGAAAAATTCCATTCAATTAGAGAAAGTTACCAATAGCAGTTAGGCTGCGC
GCTAAGGTTGAGGCCTAGGT

Downstream 100 bases:

>100_bases
TTTGCCACTCAATCTAACCAGTTATGTAGTCGTTACTTAATGTCGTAATAGTGCAATATAGTGCACGTTAGTGTTATTCG
TTTGAGTCGAAACCAAGGCT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MIRMEFIAIALLIILIGVLYILLAKYHSQRLQQRFLAQLCCQLDQQKIERRPLNISAVPQEFAPLYDSLNEMLTALPAGM
GKDKLTGLSNRVGLKRTLATMMPLTRGTMVLVDIYRFRYVNDLFGFVFGDILLKQFAERLYSLSLNPRFIARLNGDEFFL
YYDQNLTEEQLLHLRGRLQVPFRINDTPVSVRVQIGCLQLQSHHADASQMLRRLDLALKKARITRSAIACYSENDDIRQL
RELKIIDSLPKGLQQNHLYMVYQPKQNIQTGLCTQVEALIRWQHEELGTISPGEFIPLAEYAGMIDLVSQWALEQVLAQQ
AKWRTAGINLCVAVNLSTRDLDSETLPQEIASRLAYYHLPPESLMIEITESTLMADLNKAVETLDKIRALGVSLAIDDFG
TGHSSLAYLKHLPVNEVKIDKAFLQDLERDKASEYILEASINIAKKLGYQVTVEGIETLEIRDRLVAMGVDTLQGLYYAK
PMSAAELEMNWAQLHYAT

Sequences:

>Translated_498_residues
MIRMEFIAIALLIILIGVLYILLAKYHSQRLQQRFLAQLCCQLDQQKIERRPLNISAVPQEFAPLYDSLNEMLTALPAGM
GKDKLTGLSNRVGLKRTLATMMPLTRGTMVLVDIYRFRYVNDLFGFVFGDILLKQFAERLYSLSLNPRFIARLNGDEFFL
YYDQNLTEEQLLHLRGRLQVPFRINDTPVSVRVQIGCLQLQSHHADASQMLRRLDLALKKARITRSAIACYSENDDIRQL
RELKIIDSLPKGLQQNHLYMVYQPKQNIQTGLCTQVEALIRWQHEELGTISPGEFIPLAEYAGMIDLVSQWALEQVLAQQ
AKWRTAGINLCVAVNLSTRDLDSETLPQEIASRLAYYHLPPESLMIEITESTLMADLNKAVETLDKIRALGVSLAIDDFG
TGHSSLAYLKHLPVNEVKIDKAFLQDLERDKASEYILEASINIAKKLGYQVTVEGIETLEIRDRLVAMGVDTLQGLYYAK
PMSAAELEMNWAQLHYAT
>Mature_498_residues
MIRMEFIAIALLIILIGVLYILLAKYHSQRLQQRFLAQLCCQLDQQKIERRPLNISAVPQEFAPLYDSLNEMLTALPAGM
GKDKLTGLSNRVGLKRTLATMMPLTRGTMVLVDIYRFRYVNDLFGFVFGDILLKQFAERLYSLSLNPRFIARLNGDEFFL
YYDQNLTEEQLLHLRGRLQVPFRINDTPVSVRVQIGCLQLQSHHADASQMLRRLDLALKKARITRSAIACYSENDDIRQL
RELKIIDSLPKGLQQNHLYMVYQPKQNIQTGLCTQVEALIRWQHEELGTISPGEFIPLAEYAGMIDLVSQWALEQVLAQQ
AKWRTAGINLCVAVNLSTRDLDSETLPQEIASRLAYYHLPPESLMIEITESTLMADLNKAVETLDKIRALGVSLAIDDFG
TGHSSLAYLKHLPVNEVKIDKAFLQDLERDKASEYILEASINIAKKLGYQVTVEGIETLEIRDRLVAMGVDTLQGLYYAK
PMSAAELEMNWAQLHYAT

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=416, Percent_Identity=31.7307692307692, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI87081921, Length=412, Percent_Identity=29.126213592233, Blast_Score=171, Evalue=9e-44,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=34.6938775510204, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI1786507, Length=248, Percent_Identity=30.241935483871, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI226510982, Length=232, Percent_Identity=33.6206896551724, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788849, Length=247, Percent_Identity=31.5789473684211, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=234, Percent_Identity=32.0512820512821, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788502, Length=235, Percent_Identity=29.7872340425532, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=31.6666666666667, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87081980, Length=231, Percent_Identity=30.7359307359307, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787055, Length=294, Percent_Identity=26.1904761904762, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082096, Length=252, Percent_Identity=25.3968253968254, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=31.547619047619, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787410, Length=122, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 56663; Mature: 56663

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRMEFIAIALLIILIGVLYILLAKYHSQRLQQRFLAQLCCQLDQQKIERRPLNISAVPQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EFAPLYDSLNEMLTALPAGMGKDKLTGLSNRVGLKRTLATMMPLTRGTMVLVDIYRFRYV
HHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
NDLFGFVFGDILLKQFAERLYSLSLNPRFIARLNGDEFFLYYDQNLTEEQLLHLRGRLQV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHCCEEE
PFRINDTPVSVRVQIGCLQLQSHHADASQMLRRLDLALKKARITRSAIACYSENDDIRQL
EEEECCCCEEEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHH
RELKIIDSLPKGLQQNHLYMVYQPKQNIQTGLCTQVEALIRWQHEELGTISPGEFIPLAE
HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
YAGMIDLVSQWALEQVLAQQAKWRTAGINLCVAVNLSTRDLDSETLPQEIASRLAYYHLP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHEECCC
PESLMIEITESTLMADLNKAVETLDKIRALGVSLAIDDFGTGHSSLAYLKHLPVNEVKID
CHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCHHHHH
KAFLQDLERDKASEYILEASINIAKKLGYQVTVEGIETLEIRDRLVAMGVDTLQGLYYAK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCHHHHHHHHHCC
PMSAAELEMNWAQLHYAT
CCCHHHHCCCHHHEEECC
>Mature Secondary Structure
MIRMEFIAIALLIILIGVLYILLAKYHSQRLQQRFLAQLCCQLDQQKIERRPLNISAVPQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EFAPLYDSLNEMLTALPAGMGKDKLTGLSNRVGLKRTLATMMPLTRGTMVLVDIYRFRYV
HHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
NDLFGFVFGDILLKQFAERLYSLSLNPRFIARLNGDEFFLYYDQNLTEEQLLHLRGRLQV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHCCEEE
PFRINDTPVSVRVQIGCLQLQSHHADASQMLRRLDLALKKARITRSAIACYSENDDIRQL
EEEECCCCEEEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHH
RELKIIDSLPKGLQQNHLYMVYQPKQNIQTGLCTQVEALIRWQHEELGTISPGEFIPLAE
HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
YAGMIDLVSQWALEQVLAQQAKWRTAGINLCVAVNLSTRDLDSETLPQEIASRLAYYHLP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHEECCC
PESLMIEITESTLMADLNKAVETLDKIRALGVSLAIDDFGTGHSSLAYLKHLPVNEVKID
CHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCHHHHH
KAFLQDLERDKASEYILEASINIAKKLGYQVTVEGIETLEIRDRLVAMGVDTLQGLYYAK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCHHHHHHHHHCC
PMSAAELEMNWAQLHYAT
CCCHHHHCCCHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]