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The map label for this gene is yjcD [H]

Identifier: 120598022

GI number: 120598022

Start: 1352410

End: 1353762

Strand: Direct

Name: yjcD [H]

Synonym: Sputw3181_1199

Alternate gene names: 120598022

Gene position: 1352410-1353762 (Clockwise)

Preceding gene: 120598020

Following gene: 120598028

Centisome position: 28.72

GC content: 45.75

Gene sequence:

>1353_bases
ATGTCTGAGCACTTAAGTTCAACAACCGTATCCTCAGGTTCATTTCTAAACCGTTACTTTTCAATTCATCAACGTGGTAG
CACAGTTCGCCAAGAAGTCATTGCAGGGTTAACGACCTTCCTTGCCATGGTTTATTCAGTGATTGTGGTACCCAATATGC
TGGGACAAGCAGGATTTGATCCCGGTGCTGTATTTATTGCAACCTGTTTAATTGCTTCTTTCGGTTCTTTGCTGATGGGA
TTATGGGCCAACTTACCCATGGCGATTGGTTGCGCCATTTCACTCACGGCCTTTACCGCATTTAGTTTGGTACTAGGTCA
GGGCATGTCGATTCCGGTCACCTTAGGTGCGATTTTCCTGATGGGTGTGACGTTTACGCTTGTGAGTGTGACAGGCATTC
GTCAGTGGGTGCTCGCTAATTTACCTAAAGGCATTGCCCATGGTACTGGTATAGGTATCGGTTTGTTTTTACTCTTGATT
GCTACTAACAGTGTGCAGTTGATTGTGGCAAATAGTTCAGGCTTACCCGTAAAGTTAGGTGATATTAATAGCTTACCTGT
TATCGCTACTGTTATCGGTTTAGCGGCGACAATTGGTTTAGAGCGCCGTGGTGTACCAGGCGGTATTCTGTTGGTCATTA
TTGCGTTATCGGTATTTGGTTTAGTGTTCGATCCGAGCGTGAAATACCAAGGCTTATTTGCCTTCCCCGATTTTACCTCT
GAGCATTCACTAATTGGGCAACTCGATATTATGGGCGCCTTTAATCCTGTGGTATTACCGATTGTGCTTGCTTTAGTGAT
GACAGCTATTTTTGATGCAACAGGCACTATTCGTGCAGTGGCAGGGCAAGCTAACCTACTGGATAAAGATGATAATATTG
TTGGCGGCGGTAGAGCACTGACATCGGATTCTGTGAGTAGTATGTTTGCAGGTGTAGTCGGTGGCGCCCCTGCCGCTGTG
TATATCGAGTCAGCCGCAGGCACTGCCGCGGGTGGTAAAACCGGTTTAACGGCAACGATTGTTGGCGTGTTGTTTTTGTT
TATGGTTTTCCTCGCGCCTTTGAGCTACTTAGTCCCTGCTTATGCAACGGCCCCCGCGCTGATGTACGTAGGTTTATTGA
TGCTGAGTAATGTGGCAAAGCTCGACTTTAACGATAAAGTTGATGCTATGGCGGGATTGACTTGCGCAGTATTTATCATT
TTAAGCTGCAATATTGTGACGGGCATTATGCTCGGCTTTGTCACTTTAGTGATTGGTCGTATTTGCAGTGGTGAATGGCG
TAAGTTAAAGGTGGGTGTATTAGCCATTACCTTAGGCTTAGTTGTGTTTTATATGGGCGGATGGGCGATTTAA

Upstream 100 bases:

>100_bases
GATTTGGGGCTCTAATCTGCCGCAGCCAGCGTCGCCAATCGTGTTTTTTACACTCTGGTATCGACCCTAATTTTAAGAGA
TCACAAGGTATAACTACATT

Downstream 100 bases:

>100_bases
CGTCACTATCTGAACGTCACTATCTGAACGTCACTATCTGAACATTACTATCTGAACATTACTATCTGATTGTAGAAAAG
CCTTATTGTCGAAAAGCGAG

Product: xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSEHLSSTTVSSGSFLNRYFSIHQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFDPGAVFIATCLIASFGSLLMG
LWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFLMGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLI
ATNSVQLIVANSSGLPVKLGDINSLPVIATVIGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFAFPDFTS
EHSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGRALTSDSVSSMFAGVVGGAPAAV
YIESAAGTAAGGKTGLTATIVGVLFLFMVFLAPLSYLVPAYATAPALMYVGLLMLSNVAKLDFNDKVDAMAGLTCAVFII
LSCNIVTGIMLGFVTLVIGRICSGEWRKLKVGVLAITLGLVVFYMGGWAI

Sequences:

>Translated_450_residues
MSEHLSSTTVSSGSFLNRYFSIHQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFDPGAVFIATCLIASFGSLLMG
LWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFLMGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLI
ATNSVQLIVANSSGLPVKLGDINSLPVIATVIGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFAFPDFTS
EHSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGRALTSDSVSSMFAGVVGGAPAAV
YIESAAGTAAGGKTGLTATIVGVLFLFMVFLAPLSYLVPAYATAPALMYVGLLMLSNVAKLDFNDKVDAMAGLTCAVFII
LSCNIVTGIMLGFVTLVIGRICSGEWRKLKVGVLAITLGLVVFYMGGWAI
>Mature_449_residues
SEHLSSTTVSSGSFLNRYFSIHQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFDPGAVFIATCLIASFGSLLMGL
WANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFLMGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLIA
TNSVQLIVANSSGLPVKLGDINSLPVIATVIGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFAFPDFTSE
HSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGRALTSDSVSSMFAGVVGGAPAAVY
IESAAGTAAGGKTGLTATIVGVLFLFMVFLAPLSYLVPAYATAPALMYVGLLMLSNVAKLDFNDKVDAMAGLTCAVFIIL
SCNIVTGIMLGFVTLVIGRICSGEWRKLKVGVLAITLGLVVFYMGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=449, Percent_Identity=72.1603563474387, Blast_Score=639, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=438, Percent_Identity=74.4292237442922, Blast_Score=624, Evalue=1e-180,
Organism=Escherichia coli, GI87082309, Length=435, Percent_Identity=38.3908045977011, Blast_Score=281, Evalue=4e-77,
Organism=Escherichia coli, GI1790150, Length=436, Percent_Identity=37.6146788990826, Blast_Score=269, Evalue=3e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46509; Mature: 46378

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHLSSTTVSSGSFLNRYFSIHQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFD
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGAVFIATCLIASFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFL
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLIATNSVQLIVANSSGLPVKLG
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEC
DINSLPVIATVIGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFAFPDFTS
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
EHSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGRAL
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEECCCCCC
TSDSVSSMFAGVVGGAPAAVYIESAAGTAAGGKTGLTATIVGVLFLFMVFLAPLSYLVPA
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YATAPALMYVGLLMLSNVAKLDFNDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVIGR
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICSGEWRKLKVGVLAITLGLVVFYMGGWAI
HCCCCCCEEHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEHLSSTTVSSGSFLNRYFSIHQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFD
CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGAVFIATCLIASFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFL
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLIATNSVQLIVANSSGLPVKLG
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEC
DINSLPVIATVIGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFAFPDFTS
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
EHSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGRAL
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEECCCCCC
TSDSVSSMFAGVVGGAPAAVYIESAAGTAAGGKTGLTATIVGVLFLFMVFLAPLSYLVPA
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YATAPALMYVGLLMLSNVAKLDFNDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVIGR
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICSGEWRKLKVGVLAITLGLVVFYMGGWAI
HCCCCCCEEHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]