| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597919
Identifier: 120597919
GI number: 120597919
Start: 1238385
End: 1239548
Strand: Direct
Name: 120597919
Synonym: Sputw3181_1089
Alternate gene names: NA
Gene position: 1238385-1239548 (Clockwise)
Preceding gene: 120597918
Following gene: 120597920
Centisome position: 26.3
GC content: 45.36
Gene sequence:
>1164_bases ATGTTCACGGTAAATCATCAAACCAACAGAATCAGTCCTGTTAGGACAAAGAAGTTCAGTGAGTTGGGCTTTACAGAGCG CAAGCATCTTCAGGAATGGTTGGCACACGAGCCTTCCGCACTGGGTGAAGAGCTACTGATTATTCAAAAGGAGTTTGATG GCTTTGATGATACCCGTGAACGCCTAGATTTACTGGCACTGGATAAAGATGGCAACTTGGTCATTATTGAAAACAAGCTG GACGACAGTGGCCGAGATGTGGTGTGGCAGGCGCTTAAATATGCCTCGTACTGTGCAAGTTTAACCAAAGCGCAAATAGT TGAAATTTACCAGCAGTACTTAGACCGCTATGAGCCTGTAGCAGGAGAGGTTGACCTGTTAAATACCCCTTCAAGTGCTT CGGCGAGAATATGTGAGTTTTTGGATGCGCCCGATCTCGATGAGTTAAAACTCAACCTGGGTAACAGCCAGCGCATTATG TTGGTTGCGGCAAACTTTCGCAAGGAAGTGACCAGCACAGCGCTATGGTTATTGGGTCAAGGCATTAGCATTGCCTGCTT CAAAATCACTCCTTATTCACTGGGTGAACAGCTACTGATTAATATTGACCAGATCATCCCAACGCCAGAAGCGAAAGAGT TGATGATCGGTATTAATGCTAAGGAAGCGGAAGAAAAAACCACCGAAGTGGTACTAAAAAACCGCCATACCGTGCGTCGC GAGTACTGGGAGCGTGCCTTAGAGGCGTTTCAGAAAAGCTCTTGCCAACTCTATAACAATATTAGCCCAAGCAAAGATCA TTGGTTATCAGCAGGCTCAGGGCTAAGTGGGTGTCCGTATAACCTGATATTTCTGCAAAAAGAGCTTCGAGTAGAGCTTT GGATCAGCCGTGGGGTTACCGAAGAGAATAAATACCTTTTTGATTTGTTGAGTCAGTCCAAACAAGACATTGAGCATACT TTTGGTGCAGAACTTGAGTGGATGAGACTGGATGAGAAGAAATCTTGCCGTATCCAGTTTTCGACCAAAGCTGATGGGTT TAACAAAGAGACTTGGCCCCAAGCGGTTGCGTGGCACTTAGAGCAGATGACAAAGTTAGAAAAAGCCTTGAAAGGACCGC TGCAAAAAGCGGCTGAGGCAATGAAACAGAAGAATTTTGATTAA
Upstream 100 bases:
>100_bases AATCGAAAAGCTCAAAGAATACAAAACCTCCCTGATCAACAGCGCCGTGACAGGGAAAATAAAAATCACCCCAGAAATGA TTGAGCAATAGGACGCGATT
Downstream 100 bases:
>100_bases GGGAACTTACAATTATGGTCAGTCAAACCAATGAACAAGCATTAGAGTCGGCCATTGAGAAATGTCTGGCTGGGATCAGT ACTGAAGAGCTCAAAGAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MFTVNHQTNRISPVRTKKFSELGFTERKHLQEWLAHEPSALGEELLIIQKEFDGFDDTRERLDLLALDKDGNLVIIENKL DDSGRDVVWQALKYASYCASLTKAQIVEIYQQYLDRYEPVAGEVDLLNTPSSASARICEFLDAPDLDELKLNLGNSQRIM LVAANFRKEVTSTALWLLGQGISIACFKITPYSLGEQLLINIDQIIPTPEAKELMIGINAKEAEEKTTEVVLKNRHTVRR EYWERALEAFQKSSCQLYNNISPSKDHWLSAGSGLSGCPYNLIFLQKELRVELWISRGVTEENKYLFDLLSQSKQDIEHT FGAELEWMRLDEKKSCRIQFSTKADGFNKETWPQAVAWHLEQMTKLEKALKGPLQKAAEAMKQKNFD
Sequences:
>Translated_387_residues MFTVNHQTNRISPVRTKKFSELGFTERKHLQEWLAHEPSALGEELLIIQKEFDGFDDTRERLDLLALDKDGNLVIIENKL DDSGRDVVWQALKYASYCASLTKAQIVEIYQQYLDRYEPVAGEVDLLNTPSSASARICEFLDAPDLDELKLNLGNSQRIM LVAANFRKEVTSTALWLLGQGISIACFKITPYSLGEQLLINIDQIIPTPEAKELMIGINAKEAEEKTTEVVLKNRHTVRR EYWERALEAFQKSSCQLYNNISPSKDHWLSAGSGLSGCPYNLIFLQKELRVELWISRGVTEENKYLFDLLSQSKQDIEHT FGAELEWMRLDEKKSCRIQFSTKADGFNKETWPQAVAWHLEQMTKLEKALKGPLQKAAEAMKQKNFD >Mature_387_residues MFTVNHQTNRISPVRTKKFSELGFTERKHLQEWLAHEPSALGEELLIIQKEFDGFDDTRERLDLLALDKDGNLVIIENKL DDSGRDVVWQALKYASYCASLTKAQIVEIYQQYLDRYEPVAGEVDLLNTPSSASARICEFLDAPDLDELKLNLGNSQRIM LVAANFRKEVTSTALWLLGQGISIACFKITPYSLGEQLLINIDQIIPTPEAKELMIGINAKEAEEKTTEVVLKNRHTVRR EYWERALEAFQKSSCQLYNNISPSKDHWLSAGSGLSGCPYNLIFLQKELRVELWISRGVTEENKYLFDLLSQSKQDIEHT FGAELEWMRLDEKKSCRIQFSTKADGFNKETWPQAVAWHLEQMTKLEKALKGPLQKAAEAMKQKNFD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44353; Mature: 44353
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTVNHQTNRISPVRTKKFSELGFTERKHLQEWLAHEPSALGEELLIIQKEFDGFDDTRE CEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHCCCCEEEEECCCCCCCHHHH RLDLLALDKDGNLVIIENKLDDSGRDVVWQALKYASYCASLTKAQIVEIYQQYLDRYEPV HCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AGEVDLLNTPSSASARICEFLDAPDLDELKLNLGNSQRIMLVAANFRKEVTSTALWLLGQ CCCEEECCCCCCHHHHHHHHCCCCCHHHHEECCCCCCEEEEEECHHHHHHHHHHHHHHCC GISIACFKITPYSLGEQLLINIDQIIPTPEAKELMIGINAKEAEEKTTEVVLKNRHTVRR CCEEEEEEECCHHCCHHHHEEHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHH EYWERALEAFQKSSCQLYNNISPSKDHWLSAGSGLSGCPYNLIFLQKELRVELWISRGVT HHHHHHHHHHHHCCHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEEEHHHHEEEHHHCCCC EENKYLFDLLSQSKQDIEHTFGAELEWMRLDEKKSCRIQFSTKADGFNKETWPQAVAWHL CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHH EQMTKLEKALKGPLQKAAEAMKQKNFD HHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFTVNHQTNRISPVRTKKFSELGFTERKHLQEWLAHEPSALGEELLIIQKEFDGFDDTRE CEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHCCCCEEEEECCCCCCCHHHH RLDLLALDKDGNLVIIENKLDDSGRDVVWQALKYASYCASLTKAQIVEIYQQYLDRYEPV HCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AGEVDLLNTPSSASARICEFLDAPDLDELKLNLGNSQRIMLVAANFRKEVTSTALWLLGQ CCCEEECCCCCCHHHHHHHHCCCCCHHHHEECCCCCCEEEEEECHHHHHHHHHHHHHHCC GISIACFKITPYSLGEQLLINIDQIIPTPEAKELMIGINAKEAEEKTTEVVLKNRHTVRR CCEEEEEEECCHHCCHHHHEEHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHH EYWERALEAFQKSSCQLYNNISPSKDHWLSAGSGLSGCPYNLIFLQKELRVELWISRGVT HHHHHHHHHHHHCCHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEEEHHHHEEEHHHCCCC EENKYLFDLLSQSKQDIEHTFGAELEWMRLDEKKSCRIQFSTKADGFNKETWPQAVAWHL CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHH EQMTKLEKALKGPLQKAAEAMKQKNFD HHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA