| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597738
Identifier: 120597738
GI number: 120597738
Start: 1036085
End: 1036630
Strand: Direct
Name: 120597738
Synonym: Sputw3181_0908
Alternate gene names: NA
Gene position: 1036085-1036630 (Clockwise)
Preceding gene: 120597737
Following gene: 120597742
Centisome position: 22.01
GC content: 42.67
Gene sequence:
>546_bases ATGACGGATAAACCGACTGCGGCAGTAAAATTCGGCAACGTGTTTCGTATATTGATAACCCATTTACATGTGTGGCTTGC GACTTGCTGTGCGGTATTGGTATGTACTAGCCCATGGATTTTTATAGGACGAAGCCTGAGAAAAAATGCCAGTTTTTGGG ATTACCTGCATGTTTACTTAGGATTGGTCTGTACGGTTCTTGCATTATTATTCTTACTTCACAATACCTTCAATGGAAAA TGGCGCTCGTATTTTGGTTGGCTAGTGGGGGATTGGGCACAACTGAAACAAGATATCGCTGGTGTAATCAAAGGTAAGTT CCCTGTTGCGGGCGGCAAAGGGTTATTCAGTGTGGTTGAAGGCATTGGAATGTTATTGCTGGTCGCAACGGGGTTGACTG GTGTTGTGTGGTTTGTATATCAAGGTACACCAATCGCAATGGACTGGCGTGGTTATCATCTTATTTGTGCACAGGCTTTT ATTGGCTTTTTAATTGTACATATCGTGCTGGCAGCAACCCATATTATTGAATTTATTAGGCAGTAA
Upstream 100 bases:
>100_bases TACCAATGTTGAATATACAGATTGGCAGAAAGTAAACGAGTTTGGTGAGCAAATCCATCAAGCATAAAAGTGGCTTGCTA TAAGTTTAAGGGCATGGATC
Downstream 100 bases:
>100_bases TCTGTGGTCTTGAGAAGAGATGGCCTCCGTTGGAGGCCATTTTTTTACTTAACGGATTCGCTTTTGGCGGCTTAATCCAA TGACTGCTGCAAAGGCGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MTDKPTAAVKFGNVFRILITHLHVWLATCCAVLVCTSPWIFIGRSLRKNASFWDYLHVYLGLVCTVLALLFLLHNTFNGK WRSYFGWLVGDWAQLKQDIAGVIKGKFPVAGGKGLFSVVEGIGMLLLVATGLTGVVWFVYQGTPIAMDWRGYHLICAQAF IGFLIVHIVLAATHIIEFIRQ
Sequences:
>Translated_181_residues MTDKPTAAVKFGNVFRILITHLHVWLATCCAVLVCTSPWIFIGRSLRKNASFWDYLHVYLGLVCTVLALLFLLHNTFNGK WRSYFGWLVGDWAQLKQDIAGVIKGKFPVAGGKGLFSVVEGIGMLLLVATGLTGVVWFVYQGTPIAMDWRGYHLICAQAF IGFLIVHIVLAATHIIEFIRQ >Mature_180_residues TDKPTAAVKFGNVFRILITHLHVWLATCCAVLVCTSPWIFIGRSLRKNASFWDYLHVYLGLVCTVLALLFLLHNTFNGKW RSYFGWLVGDWAQLKQDIAGVIKGKFPVAGGKGLFSVVEGIGMLLLVATGLTGVVWFVYQGTPIAMDWRGYHLICAQAFI GFLIVHIVLAATHIIEFIRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20212; Mature: 20081
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDKPTAAVKFGNVFRILITHLHVWLATCCAVLVCTSPWIFIGRSLRKNASFWDYLHVYL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHH GLVCTVLALLFLLHNTFNGKWRSYFGWLVGDWAQLKQDIAGVIKGKFPVAGGKGLFSVVE HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH GIGMLLLVATGLTGVVWFVYQGTPIAMDWRGYHLICAQAFIGFLIVHIVLAATHIIEFIR HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q C >Mature Secondary Structure TDKPTAAVKFGNVFRILITHLHVWLATCCAVLVCTSPWIFIGRSLRKNASFWDYLHVYL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHH GLVCTVLALLFLLHNTFNGKWRSYFGWLVGDWAQLKQDIAGVIKGKFPVAGGKGLFSVVE HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH GIGMLLLVATGLTGVVWFVYQGTPIAMDWRGYHLICAQAFIGFLIVHIVLAATHIIEFIR HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA