| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597715
Identifier: 120597715
GI number: 120597715
Start: 1005438
End: 1007174
Strand: Direct
Name: 120597715
Synonym: Sputw3181_0885
Alternate gene names: NA
Gene position: 1005438-1007174 (Clockwise)
Preceding gene: 120597714
Following gene: 120597719
Centisome position: 21.35
GC content: 42.2
Gene sequence:
>1737_bases ATGAAAAAGATTGTGATAGCTGCGGCAATTATAGCAGCGGGTGCAGGCGCGTATTGGTACACTCAGCATGGAACAAGCTC TAGTGTCTCTGCAAATCCGTTGCTTGATTATGTGCCTGCTGACACACCGGTGTTTTCAGGCCAATTAAAGCCATTCCCGT TAAAAGCGTATTTACAGTCTATTTCTGGAAATTATCAGCAATATCCAACGGATGTTTTTGCTGAGTTAGGCGAATTAGAC AACCCAATGGGCAAGTTTTTTGTCAGCGTTTATCAGCAGTATATGGAAGGAATTAAAGAACCTGCCTTACTGCTTAAAAC CTTTGGTTTTCCAGATGAAATCAAACCTTATTTTTATACGTTAGGTGCCTTACCTGTCCTTAAAATCGATGTGGATCAAG TCGCTGCATTTTGGGCTGTTTTAGATAAAGCCGAAAAAGACAGTGGTGTTACCCATGAAATGCGTCAGATTGGTGGTGTT GATTACCGCGCCTATGCATTATCCGATGAGAGCTCATCTGAAAAGGCGGATCTGCTATTTGCCCATAAAGATGGCATTCT TACTGTGACTTTTAGTACTTCAGTGACTGAACCTGAATTATTAGAAATGGCATTAGGATTGAAGAAAGCGCCACAATCTT TGGCTGCATCAGGTATGTTGCAAGAGATCATTAAAACCCACGGTTTTATGGATGATAGCATTAGCTTTATCAACCATGTG GAAATTGTAAAAGCCTTAACCTCACCCGATAGCAATATGCTTTCTAAGCAGCTAACTAAGTTATTTGCCGATGAAAACAA CGGTGAAGATCCATTAGCTGAAATAAGAACGCCAGAATGTCGTGCTGAATTAACTGCGATTGCTGGCAATTGGCCACGGA CAGTTGCTGGTTTAACGGCTTTTTCTGTGACTGAAAAAGAAAGCCATATGGCAGCCTCATTTGTGGTGGAAACGAAAAAC CAGCCTATCCTTACCGCTTTGCAAAAAATGCGTGGTTTTATCCCTGCTCATTTAGCGAATATTGATAGCACTATTTTCTC TCTTGGACTGGGTTTTGATGTTAACGAAGTTGCACCATCACTGACTGCCGTGTGGGATGATTTACAAAAACCGCAATTAA CATGCGCACCATTGGCCGATTTGCAAGCTGAACTGAGCCAACAAAGCCCTGCTATGCTAGGTATGTTTACGGGGATGGCG AATGGCGTAAAAGGCATGAGTGTTTCATTACTCGATTACAAAATGGGGACGCAAGAGTCTGAACCTCAGCTAGAGAGTTT AGATGCCTTAGTGAGTTTAAGTGCCGATAATCCCGCAATGTTATTTAATATGGTGAAGCCATTTGCGCCTATGTTGGCAG AGGTTCAACTTGCTGAGAATGGTGATGCTACTGATTTATCCCCATTACTGATGTTGCCACCTGAATTAGGCATTAAGCCA ATGTTGGCCATCAAAGGTCAGCATTTAGTGGTTTATAGTGGTGATAAAGGCTTGGCGCTTGCAAACAAATTGGCGAGTGA AAAATTGTCGGCCAATGGCATGTATAGCCTTTCAGCAGACTATGGCAAGATGTTTACGCCGGTCATTACGCTGTTAGAAA TGAGTGGTGAGCCAATCCCTGAAGAAGTGCAAATGCTAAAAGATTACAATATGCGGATTCAAATGAGTTTTGACGTGAAT AAGCAGGGAATCGTTTTAGGTTCTGTCGTTAATTCAAAGACCAGCGATAACAAGTAA
Upstream 100 bases:
>100_bases TTTTACATTGCCTTTATCGAACAGGTGTAAACGTGAATGTGCTTTTAAATACCTAAGGGTATTACTGACAAAATTATATG TACTTAAATGGAGTTTTTAG
Downstream 100 bases:
>100_bases GTCATTACACTCCTAAATGCGTTTGAAAAGTGTCAACGCTATTTAGGACGGGTCAATTGCCATAAAAAAAGCGCCTGATT AAGGCGCTTTTTTATTTATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 578; Mature: 578
Protein sequence:
>578_residues MKKIVIAAAIIAAGAGAYWYTQHGTSSSVSANPLLDYVPADTPVFSGQLKPFPLKAYLQSISGNYQQYPTDVFAELGELD NPMGKFFVSVYQQYMEGIKEPALLLKTFGFPDEIKPYFYTLGALPVLKIDVDQVAAFWAVLDKAEKDSGVTHEMRQIGGV DYRAYALSDESSSEKADLLFAHKDGILTVTFSTSVTEPELLEMALGLKKAPQSLAASGMLQEIIKTHGFMDDSISFINHV EIVKALTSPDSNMLSKQLTKLFADENNGEDPLAEIRTPECRAELTAIAGNWPRTVAGLTAFSVTEKESHMAASFVVETKN QPILTALQKMRGFIPAHLANIDSTIFSLGLGFDVNEVAPSLTAVWDDLQKPQLTCAPLADLQAELSQQSPAMLGMFTGMA NGVKGMSVSLLDYKMGTQESEPQLESLDALVSLSADNPAMLFNMVKPFAPMLAEVQLAENGDATDLSPLLMLPPELGIKP MLAIKGQHLVVYSGDKGLALANKLASEKLSANGMYSLSADYGKMFTPVITLLEMSGEPIPEEVQMLKDYNMRIQMSFDVN KQGIVLGSVVNSKTSDNK
Sequences:
>Translated_578_residues MKKIVIAAAIIAAGAGAYWYTQHGTSSSVSANPLLDYVPADTPVFSGQLKPFPLKAYLQSISGNYQQYPTDVFAELGELD NPMGKFFVSVYQQYMEGIKEPALLLKTFGFPDEIKPYFYTLGALPVLKIDVDQVAAFWAVLDKAEKDSGVTHEMRQIGGV DYRAYALSDESSSEKADLLFAHKDGILTVTFSTSVTEPELLEMALGLKKAPQSLAASGMLQEIIKTHGFMDDSISFINHV EIVKALTSPDSNMLSKQLTKLFADENNGEDPLAEIRTPECRAELTAIAGNWPRTVAGLTAFSVTEKESHMAASFVVETKN QPILTALQKMRGFIPAHLANIDSTIFSLGLGFDVNEVAPSLTAVWDDLQKPQLTCAPLADLQAELSQQSPAMLGMFTGMA NGVKGMSVSLLDYKMGTQESEPQLESLDALVSLSADNPAMLFNMVKPFAPMLAEVQLAENGDATDLSPLLMLPPELGIKP MLAIKGQHLVVYSGDKGLALANKLASEKLSANGMYSLSADYGKMFTPVITLLEMSGEPIPEEVQMLKDYNMRIQMSFDVN KQGIVLGSVVNSKTSDNK >Mature_578_residues MKKIVIAAAIIAAGAGAYWYTQHGTSSSVSANPLLDYVPADTPVFSGQLKPFPLKAYLQSISGNYQQYPTDVFAELGELD NPMGKFFVSVYQQYMEGIKEPALLLKTFGFPDEIKPYFYTLGALPVLKIDVDQVAAFWAVLDKAEKDSGVTHEMRQIGGV DYRAYALSDESSSEKADLLFAHKDGILTVTFSTSVTEPELLEMALGLKKAPQSLAASGMLQEIIKTHGFMDDSISFINHV EIVKALTSPDSNMLSKQLTKLFADENNGEDPLAEIRTPECRAELTAIAGNWPRTVAGLTAFSVTEKESHMAASFVVETKN QPILTALQKMRGFIPAHLANIDSTIFSLGLGFDVNEVAPSLTAVWDDLQKPQLTCAPLADLQAELSQQSPAMLGMFTGMA NGVKGMSVSLLDYKMGTQESEPQLESLDALVSLSADNPAMLFNMVKPFAPMLAEVQLAENGDATDLSPLLMLPPELGIKP MLAIKGQHLVVYSGDKGLALANKLASEKLSANGMYSLSADYGKMFTPVITLLEMSGEPIPEEVQMLKDYNMRIQMSFDVN KQGIVLGSVVNSKTSDNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62673; Mature: 62673
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIVIAAAIIAAGAGAYWYTQHGTSSSVSANPLLDYVPADTPVFSGQLKPFPLKAYLQS CCHHEEEHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH ISGNYQQYPTDVFAELGELDNPMGKFFVSVYQQYMEGIKEPALLLKTFGFPDEIKPYFYT HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHH LGALPVLKIDVDQVAAFWAVLDKAEKDSGVTHEMRQIGGVDYRAYALSDESSSEKADLLF HCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE AHKDGILTVTFSTSVTEPELLEMALGLKKAPQSLAASGMLQEIIKTHGFMDDSISFINHV EECCCEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH EIVKALTSPDSNMLSKQLTKLFADENNGEDPLAEIRTPECRAELTAIAGNWPRTVAGLTA HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHHEH FSVTEKESHMAASFVVETKNQPILTALQKMRGFIPAHLANIDSTIFSLGLGFDVNEVAPS EEECCHHHHHEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH LTAVWDDLQKPQLTCAPLADLQAELSQQSPAMLGMFTGMANGVKGMSVSLLDYKMGTQES HHHHHHHHCCCCEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCC EPQLESLDALVSLSADNPAMLFNMVKPFAPMLAEVQLAENGDATDLSPLLMLPPELGIKP CCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEECCCCCCCCC MLAIKGQHLVVYSGDKGLALANKLASEKLSANGMYSLSADYGKMFTPVITLLEMSGEPIP EEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCH EEVQMLKDYNMRIQMSFDVNKQGIVLGSVVNSKTSDNK HHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCCC >Mature Secondary Structure MKKIVIAAAIIAAGAGAYWYTQHGTSSSVSANPLLDYVPADTPVFSGQLKPFPLKAYLQS CCHHEEEHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH ISGNYQQYPTDVFAELGELDNPMGKFFVSVYQQYMEGIKEPALLLKTFGFPDEIKPYFYT HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHH LGALPVLKIDVDQVAAFWAVLDKAEKDSGVTHEMRQIGGVDYRAYALSDESSSEKADLLF HCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE AHKDGILTVTFSTSVTEPELLEMALGLKKAPQSLAASGMLQEIIKTHGFMDDSISFINHV EECCCEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH EIVKALTSPDSNMLSKQLTKLFADENNGEDPLAEIRTPECRAELTAIAGNWPRTVAGLTA HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHHEH FSVTEKESHMAASFVVETKNQPILTALQKMRGFIPAHLANIDSTIFSLGLGFDVNEVAPS EEECCHHHHHEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH LTAVWDDLQKPQLTCAPLADLQAELSQQSPAMLGMFTGMANGVKGMSVSLLDYKMGTQES HHHHHHHHCCCCEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCC EPQLESLDALVSLSADNPAMLFNMVKPFAPMLAEVQLAENGDATDLSPLLMLPPELGIKP CCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEECCCCCCCCC MLAIKGQHLVVYSGDKGLALANKLASEKLSANGMYSLSADYGKMFTPVITLLEMSGEPIP EEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCH EEVQMLKDYNMRIQMSFDVNKQGIVLGSVVNSKTSDNK HHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA