| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is cysI [H]
Identifier: 120597712
GI number: 120597712
Start: 1001344
End: 1003041
Strand: Direct
Name: cysI [H]
Synonym: Sputw3181_0882
Alternate gene names: 120597712
Gene position: 1001344-1003041 (Clockwise)
Preceding gene: 120597711
Following gene: 120597713
Centisome position: 21.27
GC content: 50.24
Gene sequence:
>1698_bases ATGAGTGAGCAAAAGTTAGCGTTAAACGAATACCTAAAGACCGACAGTGATTACCTGCGCGGGACCATCAAAGAAGGTTT AGATTCTTCTGTGACAGGCAGTTTCAGCGATGGCGATCAGCAGCTGATCAAATTTCATGGCTTCTACCAGCAGGATGACC GCGATTTACGTAACGAACGTAAAGAGCAAAAACTCGAGCCTTTATATAGCTTTATGTTGCGTGCCCGCGTACCTGGTGGT ATTTGTACGCCGCAGCAATGGTTAGGTGTGGACAAAATTGCCTCGACCTTAACCAGCTCGAACAGCATTCGTTTGACGAC CCGTCAAACCTTCCAATACCACGGTATTCCTAAGCGTAACTTGAAGACCATTATTCAAGACTTAGATCGGCAGGCGCTGG ATTCGATTGCTGCCTGTGGTGACGTTAACCGTAACGTCATGTGTAACCCCAATCCGGTGGAATCTAAACTGCATGAGCAG GCCTATGCGGTGGCGAAAAAGCTCTCAGATCATCTGCTGCCACACACTCGCGCCTACGCCGAAATCTGGTTAGATGAAGA AAAGTTACTGACCACGGAAGATGAAACCGTTGAACCTGTGTATGGCAAAACCTATTTGCCACGTAAGTTTAAGATGGCGG TTGCGGTGCCTCCCGATAACGATGTTGACGTTTACACGAACGATTTAGGTTTTATCGCCGTGGCCGAAAATGGCGAGCTG GTTGGCTTTAACCTGACTGCGGGTGGCGGCATGGGCTCGACCCATGGCGAAGTGGAAACTTTCCCACGTCTGGCTGACGA CTTTGGTTTTATCAAAACTGAAGATGTGATGAAATTTGCCGAAGCTGTGATGACAGTGCAACGCGACTGGGGTAATCGCT CTAATCGTAAGCGCTCGCGCCTTAAATACACTATTGTCGACCATGGCTATGAGAAGTTTAAAGCCGAAGTCGAGGCCCGT GCTGGGGTGAAATTTGAACCTAAGCGCGATGTAGTGATTGGCGATCGCGGCGATCGTTATGGTTGGGTCGAAGGCGTTGA CGGTAAGTGGCATTTAACCTTATTTATCGAAAGCGGTCGTATTAAAGATTTACCGGGGCAAACGTTGCAAACGGGGCTGC GTGAAATTGCTAAGATCCACAAGGGCGATTTCCGCATGACCTCGAATCAAAACATGATCATCGCAGGCGTCGCGGCGGAA GATAAAGCCACCATTGAAGGCTTAGCCCGCAAACACGGTCTACTTGGCCAAGTGTTGACACAAACCCGCGGTCACTCTAT TGCCTGTGTGGCGTTGCCGACGTGTCCATTAGCGATGGCGGAAGCCGAGCGTTATTTCCCTGAGTTTATCGATCACATCG ATGCGCTGCAGGCAAAACACGGCATTAGCGAGCAAGCGATTGTGGTGCGTATGACGGGTTGTCCTAACGGTTGTGCCCGT CCATTTGCCGCTGAAATTGGCCTTGTGGGTAAGGCGCCGGGTCGTTATAACTTGTATTTAGGTGCAAGTTTTGAAGGGAC TCGCCTGAACAAGATGCACAGAGAAAATATCCAAGAGGCGGACATTCTCGCCGAATTGGATACCCTGTTTGGCCGCTACG CCGTTGAGCGTGATGCTGGCGAAACCTTTGGTAACTTCACTGTCCGCGTGGGCGTAGTGAAGGCGGTGATCGATGCCGCT AAGGATTTTCATGGCTGA
Upstream 100 bases:
>100_bases ATCTCAACCGTTGCGCAGATAAGAAACGCATAAGAATAGCCAAAGCTGCACACGTGATGACCTGTGCAGCCAGCGAACCC AATTTTAAGAGGCAGTTGCC
Downstream 100 bases:
>100_bases TCTTGAGCATAAAACCAGTGATACAGTGCCGACAGTGGTCAGCGCTGCCGAACTCAAGGCATTATTGAGTGCGCCTAAGG CTGAGCAAGCGATAGAGCTT
Product: sulfite reductase subunit beta
Products: NA
Alternate protein names: SiR-HP; SiRHP [H]
Number of amino acids: Translated: 565; Mature: 564
Protein sequence:
>565_residues MSEQKLALNEYLKTDSDYLRGTIKEGLDSSVTGSFSDGDQQLIKFHGFYQQDDRDLRNERKEQKLEPLYSFMLRARVPGG ICTPQQWLGVDKIASTLTSSNSIRLTTRQTFQYHGIPKRNLKTIIQDLDRQALDSIAACGDVNRNVMCNPNPVESKLHEQ AYAVAKKLSDHLLPHTRAYAEIWLDEEKLLTTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVAENGEL VGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRSNRKRSRLKYTIVDHGYEKFKAEVEAR AGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGVAAE DKATIEGLARKHGLLGQVLTQTRGHSIACVALPTCPLAMAEAERYFPEFIDHIDALQAKHGISEQAIVVRMTGCPNGCAR PFAAEIGLVGKAPGRYNLYLGASFEGTRLNKMHRENIQEADILAELDTLFGRYAVERDAGETFGNFTVRVGVVKAVIDAA KDFHG
Sequences:
>Translated_565_residues MSEQKLALNEYLKTDSDYLRGTIKEGLDSSVTGSFSDGDQQLIKFHGFYQQDDRDLRNERKEQKLEPLYSFMLRARVPGG ICTPQQWLGVDKIASTLTSSNSIRLTTRQTFQYHGIPKRNLKTIIQDLDRQALDSIAACGDVNRNVMCNPNPVESKLHEQ AYAVAKKLSDHLLPHTRAYAEIWLDEEKLLTTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVAENGEL VGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRSNRKRSRLKYTIVDHGYEKFKAEVEAR AGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGVAAE DKATIEGLARKHGLLGQVLTQTRGHSIACVALPTCPLAMAEAERYFPEFIDHIDALQAKHGISEQAIVVRMTGCPNGCAR PFAAEIGLVGKAPGRYNLYLGASFEGTRLNKMHRENIQEADILAELDTLFGRYAVERDAGETFGNFTVRVGVVKAVIDAA KDFHG >Mature_564_residues SEQKLALNEYLKTDSDYLRGTIKEGLDSSVTGSFSDGDQQLIKFHGFYQQDDRDLRNERKEQKLEPLYSFMLRARVPGGI CTPQQWLGVDKIASTLTSSNSIRLTTRQTFQYHGIPKRNLKTIIQDLDRQALDSIAACGDVNRNVMCNPNPVESKLHEQA YAVAKKLSDHLLPHTRAYAEIWLDEEKLLTTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVAENGELV GFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRSNRKRSRLKYTIVDHGYEKFKAEVEARA GVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGVAAED KATIEGLARKHGLLGQVLTQTRGHSIACVALPTCPLAMAEAERYFPEFIDHIDALQAKHGISEQAIVVRMTGCPNGCARP FAAEIGLVGKAPGRYNLYLGASFEGTRLNKMHRENIQEADILAELDTLFGRYAVERDAGETFGNFTVRVGVVKAVIDAAK DFHG
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate [H]
COG id: COG0155
COG function: function code P; Sulfite reductase, beta subunit (hemoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]
Homologues:
Organism=Escherichia coli, GI1789122, Length=561, Percent_Identity=58.2887700534759, Blast_Score=694, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6322597, Length=593, Percent_Identity=43.8448566610455, Blast_Score=528, Evalue=1e-150,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011786 - InterPro: IPR005117 - InterPro: IPR006067 - InterPro: IPR006066 [H]
Pfam domain/function: PF01077 NIR_SIR; PF03460 NIR_SIR_ferr [H]
EC number: =1.8.1.2 [H]
Molecular weight: Translated: 62997; Mature: 62866
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: PS00365 NIR_SIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEQKLALNEYLKTDSDYLRGTIKEGLDSSVTGSFSDGDQQLIKFHGFYQQDDRDLRNER CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH KEQKLEPLYSFMLRARVPGGICTPQQWLGVDKIASTLTSSNSIRLTTRQTFQYHGIPKRN HHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCCCEEEEEEEEEEECCCCHHH LKTIIQDLDRQALDSIAACGDVNRNVMCNPNPVESKLHEQAYAVAKKLSDHLLPHTRAYA HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH EIWLDEEKLLTTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVAENGEL HHEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCE VGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRSNRKRSR EEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH LKYTIVDHGYEKFKAEVEARAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGR EEEEEECCCHHHHHHHHHHHCCCEECCCCCEEECCCCCCCCCEECCCCEEEEEEEEECCC IKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGVAAEDKATIEGLARKHGLLGQVLT CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH QTRGHSIACVALPTCPLAMAEAERYFPEFIDHIDALQAKHGISEQAIVVRMTGCPNGCAR HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC PFAAEIGLVGKAPGRYNLYLGASFEGTRLNKMHRENIQEADILAELDTLFGRYAVERDAG CHHHHCCCEECCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC ETFGNFTVRVGVVKAVIDAAKDFHG CCCCCEEEEHHHHHHHHHHHHHCCC >Mature Secondary Structure SEQKLALNEYLKTDSDYLRGTIKEGLDSSVTGSFSDGDQQLIKFHGFYQQDDRDLRNER CCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH KEQKLEPLYSFMLRARVPGGICTPQQWLGVDKIASTLTSSNSIRLTTRQTFQYHGIPKRN HHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCCCEEEEEEEEEEECCCCHHH LKTIIQDLDRQALDSIAACGDVNRNVMCNPNPVESKLHEQAYAVAKKLSDHLLPHTRAYA HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH EIWLDEEKLLTTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVAENGEL HHEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCE VGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRSNRKRSR EEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH LKYTIVDHGYEKFKAEVEARAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGR EEEEEECCCHHHHHHHHHHHCCCEECCCCCEEECCCCCCCCCEECCCCEEEEEEEEECCC IKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGVAAEDKATIEGLARKHGLLGQVLT CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH QTRGHSIACVALPTCPLAMAEAERYFPEFIDHIDALQAKHGISEQAIVVRMTGCPNGCAR HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC PFAAEIGLVGKAPGRYNLYLGASFEGTRLNKMHRENIQEADILAELDTLFGRYAVERDAG CHHHHCCCEECCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC ETFGNFTVRVGVVKAVIDAAKDFHG CCCCCEEEEHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA