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The map label for this gene is csgD [C]

Identifier: 120597637

GI number: 120597637

Start: 911296

End: 911925

Strand: Direct

Name: csgD [C]

Synonym: Sputw3181_0806

Alternate gene names: 120597637

Gene position: 911296-911925 (Clockwise)

Preceding gene: 120597636

Following gene: 120597648

Centisome position: 19.35

GC content: 43.17

Gene sequence:

>630_bases
ATGGCCGCGCCATGTCATTTAGCGTTACTCGCTGAATCCATAGGTTTGAAAACGCGTATTGTAAAGCACGCAGCAGAATT
GGATTTAGATAAAAGCCGTCGTAGTTTTTATCTGATCACCCAAAAAGGTTCAGCATTAGATAACAAAGGAATTCCTTTGC
TGGCTTCGCGTTTAGTGTCACATTTTCCTGTGGCGCTGTATCAAGTTGAGCGAGACTCCTTAGACCAAGAATCTGCAATG
TTACTCGGCATTCGAGGTATTTTATTTGCCGATCAACGTATGGATCTGATGTTAACGGGTTTACGTAAAATGGTGGCAGA
GGAGCTTTGGTACGATAGAACGTTGCTAAGCAAAATGTTTCGCCGTGTCGTACAAAAGTTAGAGGGTAATAATGAGATGC
CCTCCGATACTGTGGCTATGCTGCAGATGCTGACATCCCGTGAACGTACCATTATTCAATTTGTATCCAGTGGCGCAAGG
AATAAAGAAATTGCCCATAGGTTATGCATCAGCGAACATACAGTAAAAGCACACATTTCCTCTATTTTCCGCAAGACCCA
GTCTCGTAATCGGGTTGAGCTTTTACGTTGGGCGCAAACCTATCAAACTCACTTTGAGCTATGTAGTTAA

Upstream 100 bases:

>100_bases
AACTAGAAGACGAGTCAAACAGACCATTTTGCAATAAGAGAATACTTTTCAGGGAGGAGAGTCATTGAGCACAATTAATG
AATTGGTTTTTTTACACCAA

Downstream 100 bases:

>100_bases
CCTGCAAAGGGTGTGGTCATTTGCCTGTTGCTTTGAGTGGTTAATGTTAATGATTGCTGGCATATCAAAATAGAAAAGCG
GGAATGTTTATGTAAACATT

Product: response regulator receiver protein

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Transcriptional Regulator LuxR Family Protein; Two Component LuxR Family Transcriptional Regulator; CsgAB Operon Transcriptional Regulatory Protein; Response Regulator; Regulatory Protein LuxR; Response Regulator Receiver Protein; Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; LuxR Family CSG Operon Transcriptional Regulator; Two-Component Response Regulator; Transcriptional Regulator; Csg Operon Transcription Regulator Protein; Protein-Glutamate Methylesterase; Transcriptional Regulator VpsT; Nitrate/Nitrite Response Regulator

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MAAPCHLALLAESIGLKTRIVKHAAELDLDKSRRSFYLITQKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAM
LLGIRGILFADQRMDLMLTGLRKMVAEELWYDRTLLSKMFRRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGAR
NKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQTYQTHFELCS

Sequences:

>Translated_209_residues
MAAPCHLALLAESIGLKTRIVKHAAELDLDKSRRSFYLITQKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAM
LLGIRGILFADQRMDLMLTGLRKMVAEELWYDRTLLSKMFRRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGAR
NKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQTYQTHFELCS
>Mature_208_residues
AAPCHLALLAESIGLKTRIVKHAAELDLDKSRRSFYLITQKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAML
LGIRGILFADQRMDLMLTGLRKMVAEELWYDRTLLSKMFRRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGARN
KEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQTYQTHFELCS

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787277, Length=116, Percent_Identity=31.0344827586207, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23930; Mature: 23799

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPCHLALLAESIGLKTRIVKHAAELDLDKSRRSFYLITQKGSALDNKGIPLLASRLVS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
HFPVALYQVERDSLDQESAMLLGIRGILFADQRMDLMLTGLRKMVAEELWYDRTLLSKMF
HCCHHHHHEHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHIS
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
SIFRKTQSRNRVELLRWAQTYQTHFELCS
HHHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAPCHLALLAESIGLKTRIVKHAAELDLDKSRRSFYLITQKGSALDNKGIPLLASRLVS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
HFPVALYQVERDSLDQESAMLLGIRGILFADQRMDLMLTGLRKMVAEELWYDRTLLSKMF
HCCHHHHHEHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRVVQKLEGNNEMPSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHIS
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
SIFRKTQSRNRVELLRWAQTYQTHFELCS
HHHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA