| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is ylaK [H]
Identifier: 120597471
GI number: 120597471
Start: 698867
End: 700261
Strand: Direct
Name: ylaK [H]
Synonym: Sputw3181_0640
Alternate gene names: 120597471
Gene position: 698867-700261 (Clockwise)
Preceding gene: 120597468
Following gene: 120597472
Centisome position: 14.84
GC content: 45.09
Gene sequence:
>1395_bases ATGGAACAAGACGACAGAAAGTTGTTTGTACTGGATACCAATGTGTTACTGCATGAACCTTTGGCGATCTATTCGTTTAA AGAGCACGATGTGGTCATTCCGATGACAGTGCTAGAAGAGCTAGACCAGATAAAAGATCGAAAGAGTGATGTGAGTCGGG ATGCTAGGGTGGCCATCAGGGCGTTGGAGGATACCCTAGGAGGTGATACCACACCTGAGCAGATTATTAATGGTGTACCA CTGCCGAGTCGAGAGGGTCATGCCGATGCGATAGGAGCGCTCTCTATTTTCCCCGATCACCTTGTTGATTTTACCTTAGG CAGCTTGCCGGGGGATGGAAATGACAACCGCATTATCAACACTGCACTTCACCTACAAAACCTCCACCATCCACGTACCG TCGTATTAGTCACTAAAGACATCAATATGCGCCTTAAAGCCAAAGGTGCTGGCATTCAATTAGTGGAAGATTACCGTACC GACCAGTTGATTGATGATATTCGCTTCCTCAGTAAAGGTTTTTACCAATTTGAAGGCAATTTTTGGGAACATTTAAATAA AGTTTCTACCGAGCGCCATGGCAGACATATTATCCATGAAGTGCCACTTAAGGATCTGGAAAACGATCAATTTTATATTA ACCAATACCTTATCGATACAGAGTCGGATTTTTGTGGCCGAGTCACGGGGCGCACCGACACGCACCTACATATTTTAGAT TTAGGTCGTGAGCGGATGAAAAACCTTGAGGCTTGGGGGGTTAAACCGAAAAATGTCTATCAAGGCATGGCATTACAGGC GCTACTCGATCCCGATATCGAACTCGTGATTTTAACGGGCCCCGCAGGTTGTGGTAAAACCTTGCTTGCTATGGCTGCAG CCCTTGAGCTTGTGGTTGAGCGTAACCGCTACGACAAGGTGATAGTCACCCGTAACACGCCTGAAATAGCGGAGTCTATT GGTTTTTTACCCGGCACAGAAGAAGAGAAAATGATGCCGTGGCTCGCCGCCATCACAGATACCTTAGAAGTGCTGCACAA GAATGATGTGAATCCCACGGGCAGCCTCAATTACATTATGGAAAAGGCCAATATTCAGTTTAAGTCGATTAATTTTATGC GTGGCCGCTCGATTCAAAACTCAATTGTATTATTGGATGAGTGCCAAAATCTCACAGCTTCGCAGATTAAAACTATGATT ACCCGTATGGGTGAAGGTACAAAGCTGATTTGTTGCGGTAACTTAGCGCAAATCGATTCTAATTATTTAACTGCCGTTAC CTCAGGGCTGACCTACATTGTTGAGCGCTTTAAAGACTTTGAAGGTAGTGCTAACTTGTACCTCAATGGGGTTGTACGTT CACGTTTGGCTGAATATGCCGAAGAACACCTTTAA
Upstream 100 bases:
>100_bases AAAGATCATTCTAACCTTATCTAAGCTAATGACAGGAGCCATGCAATCTAACGTGAGACAGGATGTAGCGTAGACATCAA TCAAGCACTATGGAGGCGCC
Downstream 100 bases:
>100_bases CTGAACCCTTGAATATGACCAAAAGGCCTCGTCTTTGAGGCCTTTGTTTTTCTGCACCCATTTACACTTTTTTAATCGAT GAATCATGGGCATGGATAGC
Product: PhoH family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 464; Mature: 464
Protein sequence:
>464_residues MEQDDRKLFVLDTNVLLHEPLAIYSFKEHDVVIPMTVLEELDQIKDRKSDVSRDARVAIRALEDTLGGDTTPEQIINGVP LPSREGHADAIGALSIFPDHLVDFTLGSLPGDGNDNRIINTALHLQNLHHPRTVVLVTKDINMRLKAKGAGIQLVEDYRT DQLIDDIRFLSKGFYQFEGNFWEHLNKVSTERHGRHIIHEVPLKDLENDQFYINQYLIDTESDFCGRVTGRTDTHLHILD LGRERMKNLEAWGVKPKNVYQGMALQALLDPDIELVILTGPAGCGKTLLAMAAALELVVERNRYDKVIVTRNTPEIAESI GFLPGTEEEKMMPWLAAITDTLEVLHKNDVNPTGSLNYIMEKANIQFKSINFMRGRSIQNSIVLLDECQNLTASQIKTMI TRMGEGTKLICCGNLAQIDSNYLTAVTSGLTYIVERFKDFEGSANLYLNGVVRSRLAEYAEEHL
Sequences:
>Translated_464_residues MEQDDRKLFVLDTNVLLHEPLAIYSFKEHDVVIPMTVLEELDQIKDRKSDVSRDARVAIRALEDTLGGDTTPEQIINGVP LPSREGHADAIGALSIFPDHLVDFTLGSLPGDGNDNRIINTALHLQNLHHPRTVVLVTKDINMRLKAKGAGIQLVEDYRT DQLIDDIRFLSKGFYQFEGNFWEHLNKVSTERHGRHIIHEVPLKDLENDQFYINQYLIDTESDFCGRVTGRTDTHLHILD LGRERMKNLEAWGVKPKNVYQGMALQALLDPDIELVILTGPAGCGKTLLAMAAALELVVERNRYDKVIVTRNTPEIAESI GFLPGTEEEKMMPWLAAITDTLEVLHKNDVNPTGSLNYIMEKANIQFKSINFMRGRSIQNSIVLLDECQNLTASQIKTMI TRMGEGTKLICCGNLAQIDSNYLTAVTSGLTYIVERFKDFEGSANLYLNGVVRSRLAEYAEEHL >Mature_464_residues MEQDDRKLFVLDTNVLLHEPLAIYSFKEHDVVIPMTVLEELDQIKDRKSDVSRDARVAIRALEDTLGGDTTPEQIINGVP LPSREGHADAIGALSIFPDHLVDFTLGSLPGDGNDNRIINTALHLQNLHHPRTVVLVTKDINMRLKAKGAGIQLVEDYRT DQLIDDIRFLSKGFYQFEGNFWEHLNKVSTERHGRHIIHEVPLKDLENDQFYINQYLIDTESDFCGRVTGRTDTHLHILD LGRERMKNLEAWGVKPKNVYQGMALQALLDPDIELVILTGPAGCGKTLLAMAAALELVVERNRYDKVIVTRNTPEIAESI GFLPGTEEEKMMPWLAAITDTLEVLHKNDVNPTGSLNYIMEKANIQFKSINFMRGRSIQNSIVLLDECQNLTASQIKTMI TRMGEGTKLICCGNLAQIDSNYLTAVTSGLTYIVERFKDFEGSANLYLNGVVRSRLAEYAEEHL
Specific function: Unknown
COG id: COG1875
COG function: function code T; Predicted ATPase related to phosphate starvation-inducible protein PhoH
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PINc domain [H]
Homologues:
Organism=Escherichia coli, GI1787257, Length=191, Percent_Identity=35.6020942408377, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI145693103, Length=189, Percent_Identity=35.4497354497354, Blast_Score=97, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 - InterPro: IPR006596 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 52249; Mature: 52249
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQDDRKLFVLDTNVLLHEPLAIYSFKEHDVVIPMTVLEELDQIKDRKSDVSRDARVAIR CCCCCCEEEEEECCCCEECCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHH ALEDTLGGDTTPEQIINGVPLPSREGHADAIGALSIFPDHLVDFTLGSLPGDGNDNRIIN HHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCEEE TALHLQNLHHPRTVVLVTKDINMRLKAKGAGIQLVEDYRTDQLIDDIRFLSKGFYQFEGN HHHHHHHCCCCEEEEEEEECCCEEEEECCCCEEEEHHHCHHHHHHHHHHHHCCCEEECCC FWEHLNKVSTERHGRHIIHEVPLKDLENDQFYINQYLIDTESDFCGRVTGRTDTHLHILD HHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEC LGRERMKNLEAWGVKPKNVYQGMALQALLDPDIELVILTGPAGCGKTLLAMAAALELVVE CCHHHHCCHHHCCCCHHHHHHCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH RNRYDKVIVTRNTPEIAESIGFLPGTEEEKMMPWLAAITDTLEVLHKNDVNPTGSLNYIM CCCCCEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEE EKANIQFKSINFMRGRSIQNSIVLLDECQNLTASQIKTMITRMGEGTKLICCGNLAQIDS HHCCEEEEEEEECCCCCCCCCEEEEEHHCCCCHHHHHHHHHHCCCCCEEEEECCHHHHCC NYLTAVTSGLTYIVERFKDFEGSANLYLNGVVRSRLAEYAEEHL CHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCC >Mature Secondary Structure MEQDDRKLFVLDTNVLLHEPLAIYSFKEHDVVIPMTVLEELDQIKDRKSDVSRDARVAIR CCCCCCEEEEEECCCCEECCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHH ALEDTLGGDTTPEQIINGVPLPSREGHADAIGALSIFPDHLVDFTLGSLPGDGNDNRIIN HHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCEEE TALHLQNLHHPRTVVLVTKDINMRLKAKGAGIQLVEDYRTDQLIDDIRFLSKGFYQFEGN HHHHHHHCCCCEEEEEEEECCCEEEEECCCCEEEEHHHCHHHHHHHHHHHHCCCEEECCC FWEHLNKVSTERHGRHIIHEVPLKDLENDQFYINQYLIDTESDFCGRVTGRTDTHLHILD HHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEC LGRERMKNLEAWGVKPKNVYQGMALQALLDPDIELVILTGPAGCGKTLLAMAAALELVVE CCHHHHCCHHHCCCCHHHHHHCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH RNRYDKVIVTRNTPEIAESIGFLPGTEEEKMMPWLAAITDTLEVLHKNDVNPTGSLNYIM CCCCCEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEE EKANIQFKSINFMRGRSIQNSIVLLDECQNLTASQIKTMITRMGEGTKLICCGNLAQIDS HHCCEEEEEEEECCCCCCCCCEEEEEHHCCCCHHHHHHHHHHCCCCCEEEEECCHHHHCC NYLTAVTSGLTYIVERFKDFEGSANLYLNGVVRSRLAEYAEEHL CHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]