| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597452
Identifier: 120597452
GI number: 120597452
Start: 678261
End: 678785
Strand: Direct
Name: 120597452
Synonym: Sputw3181_0621
Alternate gene names: NA
Gene position: 678261-678785 (Clockwise)
Preceding gene: 120597450
Following gene: 120597455
Centisome position: 14.41
GC content: 40.76
Gene sequence:
>525_bases ATGAAAGTTCAATTCCTTTTACTCGCAGGGGTATTAAGTTGCAGTGCAGTGTGGGCCGCAGATGAAACATCAACCCATCC TGTCACGGAAGATGGTGTGGTGAAAATTGTTTGGCAAAATCCGAAGGATTTTCGCGATATTAAATCATCGGGGGAAGTTC AATCCCGTTATGAGACTCGCTTATTTGAGACCTTAACCAAGAATATCAATAAAGAAGCCGCTAAAATTTTAAAACCCAAT CAAAAGCTTGAAATGATGGTTACCGATGTGGATTTAGCGGGGGATATGCGTCCAACATTTGGTGCAACGGCAAATGATTT ACGGGTTGTGAAGGATATTTACCCACCACGAATCACCTTTAGCTACCAGGTGTTAGAGAATGATAAAGTGATCGTTGCTG GGGATGAAAAATTATCTGATATGGGGTTTTTAACGGGTATTCAGCCCTTAAACGATAAACCTTTTATGTATGAAACACAG ATGCTAAACGACTGGTTAAAAAAGACCATCGCCCCTAAGATTTAG
Upstream 100 bases:
>100_bases TGTGTTTATTTTATGTTCTTGAGACTGTTTTGCGTTAAGCTTTAGTTCAGGTTAGATTTTGTACTGTCAATATAGAAATG ATTAGGCCTAGGAGGCAAGC
Downstream 100 bases:
>100_bases ATGTAAAGCCATCTTAAGCGATTAATGCGTGTGGATTGAGTGCATTATTTTCCAACAGGCAAAATCCATTACTTGCGGAT TTTGCCTGTTTTTTTGCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MKVQFLLLAGVLSCSAVWAADETSTHPVTEDGVVKIVWQNPKDFRDIKSSGEVQSRYETRLFETLTKNINKEAAKILKPN QKLEMMVTDVDLAGDMRPTFGATANDLRVVKDIYPPRITFSYQVLENDKVIVAGDEKLSDMGFLTGIQPLNDKPFMYETQ MLNDWLKKTIAPKI
Sequences:
>Translated_174_residues MKVQFLLLAGVLSCSAVWAADETSTHPVTEDGVVKIVWQNPKDFRDIKSSGEVQSRYETRLFETLTKNINKEAAKILKPN QKLEMMVTDVDLAGDMRPTFGATANDLRVVKDIYPPRITFSYQVLENDKVIVAGDEKLSDMGFLTGIQPLNDKPFMYETQ MLNDWLKKTIAPKI >Mature_174_residues MKVQFLLLAGVLSCSAVWAADETSTHPVTEDGVVKIVWQNPKDFRDIKSSGEVQSRYETRLFETLTKNINKEAAKILKPN QKLEMMVTDVDLAGDMRPTFGATANDLRVVKDIYPPRITFSYQVLENDKVIVAGDEKLSDMGFLTGIQPLNDKPFMYETQ MLNDWLKKTIAPKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19671; Mature: 19671
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVQFLLLAGVLSCSAVWAADETSTHPVTEDGVVKIVWQNPKDFRDIKSSGEVQSRYETR CCEEHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHH LFETLTKNINKEAAKILKPNQKLEMMVTDVDLAGDMRPTFGATANDLRVVKDIYPPRITF HHHHHHHHCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEE SYQVLENDKVIVAGDEKLSDMGFLTGIQPLNDKPFMYETQMLNDWLKKTIAPKI EEEEECCCEEEEECCCCCHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKVQFLLLAGVLSCSAVWAADETSTHPVTEDGVVKIVWQNPKDFRDIKSSGEVQSRYETR CCEEHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHH LFETLTKNINKEAAKILKPNQKLEMMVTDVDLAGDMRPTFGATANDLRVVKDIYPPRITF HHHHHHHHCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEE SYQVLENDKVIVAGDEKLSDMGFLTGIQPLNDKPFMYETQMLNDWLKKTIAPKI EEEEECCCEEEEECCCCCHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA