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The map label for this gene is yciR [C]

Identifier: 120597444

GI number: 120597444

Start: 671473

End: 673194

Strand: Direct

Name: yciR [C]

Synonym: Sputw3181_0613

Alternate gene names: 120597444

Gene position: 671473-673194 (Clockwise)

Preceding gene: 120597443

Following gene: 120597445

Centisome position: 14.26

GC content: 42.22

Gene sequence:

>1722_bases
ATGGATTTACTACTAATCGATGATGATGAAGTGGATAGAACCGCGGTCATCAGAGCATTGAGGCAGTCAAAATTAGCGTT
TAATGTCATTGAGGCAAATTGTGCGTTCGATGGATTAAACCTAGCGTTAGAACGCCATTTTGATGGCATTTTATTGGACT
ACATGCTGCCCGATGCCAATGGCCTCGAAGTGCTGATTAAACTCAATGCGATGACTCAAGACCAAACCGTAGTCGTGATG
CTCAGCCGTTATGAAGATGAAAAGTTAGCCCAGCGCTGTATAGAACTGGGTGCTCAGGATTTCTTACTCAAAGATGAAGT
TAATTCCCGTATTCTTACCCGAGCTATTCGTTACGCCAAACAACGAGCCTCAATGGCATTAGCACTACGTAATAGCCATC
AAAAACTGAAAGAGCTAGCGGAGCATGATTCGCTGACGAAACTCGTTAACCGTTATGGGTTCGAGCTTTGTTTAAATCGA
GCCATAGCTAGAGCCAAAAGGAGTAACAATTATTTAGCGGTAATTCTACTCGATCTAGATGATTTTAAAGCGATTAACGA
TACATTAGGTCACCAGACTGGCGATATCTTATTAGTCAAAGTGGCCTCTCGCTTAAGTGAGGTTCTGCGGGATGGTGATG
TCATTGCTCGTTTAGGGGGCGATGAGTTTGTTGTCCTGGTGACGGATGATGATTACAAGTATTTTCCGATGATAGTGGCT
AATCGACTGCTTAAGGCATTTGAGGAGGTTTTTTGCCTCGGGGATAATGATGTGCTGATTGGTGCCAGTATTGGCGTTGC
TTTTTATAACGAGGCTGCATCAGACAGTTCCGAGTTGATGAAATGTGCCGATATTGCGATGTACCGCGCCAAGAAAATGG
GGCGTAATCAGATCCAATTTTATTCTGAAGCCTTAGATAGAGAGGTGCGTTATCGCAATCATATCGAGTCAAGTCTTAGG
GTTGCACTCAGACAGAATGAATTTAAGGTGTATTACCAAGCACAGGTTGATTCTTTGACCCATCAAATGGTCGGTATGGA
AGCACTTATTCGTTGGCAGCATCTTAAAGACGGGGTTATCGCACCGGATCAGTTTCTCCCTATTGCAGAAGAGATGGGCC
TGATGGAGGAGATTGGGGATTGGGTTCTCGCGGAGGCTTGTAGACAAGCTCAGATTTGGCTGACACAACTAAAACCCATT
GGGCGTGATTTCACCATTGCGGTAAATTTATCAGCCTCACAAATAGCGCAGATTGATTTGCTGAGTAAAATTATCCAAAC
ACTGGAATTAACGGGTTTACCTCCTACAGCACTAGAGTTAGAGATTACTGAGAATTGTTTGATTGAAGATCCCCATGAAC
ACGCTAAAGTTTTAGATCAAATCGCTAAACTTGGTGTTCGTTTCGCCCTCGATGATTTTGGTACAGGATTTTCATCCTTA
GAACACATCAAATTATTCCCTATCAGTGTATTGAAAATAGATAAAAGCTTTATCGCATCCTACGATAAAGATGAAAAAGA
CACTCGATTATTAGCCGCATTACTTAATTTTGCCTATGGTTTTAATGTTATTTCTGTCGCAGAAGGCGTGGAAACATTGG
AACAGGCGGAGTTTTGTACGGCTCGCAATTGTAATATTTTGCAAGGATATTTATTCTCTCGGCCCTTAGAGGCAATAGAC
TTTGAGGCAAAATTTATTACACCATTACTCACAAAATTGTGA

Upstream 100 bases:

>100_bases
TATGGTGAAAACGGATATAAAAGACGGTTTTAATAATATTTTTAATATGTTGGAAGGTTACTGGCGTATTGTTGAGCTTC
CATCGGCATAGGATGGGCAT

Downstream 100 bases:

>100_bases
ACCTTATCCAGTGGTCATTCCTGTAAACCGTTTTCATCTGGTGAGGAATATTTTCTTGCTTTACACTGAGCAATAGACAA
ATATCAGCCCCCCTTTTCTG

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 573

Protein sequence:

>573_residues
MDLLLIDDDEVDRTAVIRALRQSKLAFNVIEANCAFDGLNLALERHFDGILLDYMLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRASMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRSNNYLAVILLDLDDFKAINDTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVA
NRLLKAFEEVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALDREVRYRNHIESSLR
VALRQNEFKVYYQAQVDSLTHQMVGMEALIRWQHLKDGVIAPDQFLPIAEEMGLMEEIGDWVLAEACRQAQIWLTQLKPI
GRDFTIAVNLSASQIAQIDLLSKIIQTLELTGLPPTALELEITENCLIEDPHEHAKVLDQIAKLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFIASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETLEQAEFCTARNCNILQGYLFSRPLEAID
FEAKFITPLLTKL

Sequences:

>Translated_573_residues
MDLLLIDDDEVDRTAVIRALRQSKLAFNVIEANCAFDGLNLALERHFDGILLDYMLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRASMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRSNNYLAVILLDLDDFKAINDTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVA
NRLLKAFEEVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALDREVRYRNHIESSLR
VALRQNEFKVYYQAQVDSLTHQMVGMEALIRWQHLKDGVIAPDQFLPIAEEMGLMEEIGDWVLAEACRQAQIWLTQLKPI
GRDFTIAVNLSASQIAQIDLLSKIIQTLELTGLPPTALELEITENCLIEDPHEHAKVLDQIAKLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFIASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETLEQAEFCTARNCNILQGYLFSRPLEAID
FEAKFITPLLTKL
>Mature_573_residues
MDLLLIDDDEVDRTAVIRALRQSKLAFNVIEANCAFDGLNLALERHFDGILLDYMLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRASMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRSNNYLAVILLDLDDFKAINDTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVA
NRLLKAFEEVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALDREVRYRNHIESSLR
VALRQNEFKVYYQAQVDSLTHQMVGMEALIRWQHLKDGVIAPDQFLPIAEEMGLMEEIGDWVLAEACRQAQIWLTQLKPI
GRDFTIAVNLSASQIAQIDLLSKIIQTLELTGLPPTALELEITENCLIEDPHEHAKVLDQIAKLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFIASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETLEQAEFCTARNCNILQGYLFSRPLEAID
FEAKFITPLLTKL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=34.8729792147806, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI87081921, Length=450, Percent_Identity=32.2222222222222, Blast_Score=234, Evalue=8e-63,
Organism=Escherichia coli, GI226510982, Length=442, Percent_Identity=29.4117647058824, Blast_Score=189, Evalue=4e-49,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=32.9365079365079, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1786507, Length=258, Percent_Identity=31.0077519379845, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=34.375, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=29.6296296296296, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081845, Length=257, Percent_Identity=31.9066147859922, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1787055, Length=448, Percent_Identity=25.6696428571429, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788381, Length=413, Percent_Identity=26.1501210653753, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693134, Length=207, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87081743, Length=267, Percent_Identity=28.8389513108614, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1788849, Length=446, Percent_Identity=24.6636771300448, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=34.2541436464088, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=34.1040462427746, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=206, Percent_Identity=31.0679611650485, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87082096, Length=247, Percent_Identity=26.3157894736842, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=36.9047619047619, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787802, Length=210, Percent_Identity=30.952380952381, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=35.7142857142857, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=31.2883435582822, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788085, Length=206, Percent_Identity=30.5825242718447, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=34.5911949685535, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=98, Percent_Identity=35.7142857142857, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64658; Mature: 64658

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLLIDDDEVDRTAVIRALRQSKLAFNVIEANCAFDGLNLALERHFDGILLDYMLPDAN
CEEEEECCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCC
GLEVLIKLNAMTQDQTVVVMLSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAK
CCEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHCEEHHHHHHHHHHHHHHHHH
QRASMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNNYLAVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
DFKAINDTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCHHHHHHH
NRLLKAFEEVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQF
HHHHHHHHHHEECCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YSEALDREVRYRNHIESSLRVALRQNEFKVYYQAQVDSLTHQMVGMEALIRWQHLKDGVI
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
APDQFLPIAEEMGLMEEIGDWVLAEACRQAQIWLTQLKPIGRDFTIAVNLSASQIAQIDL
CCHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH
LSKIIQTLELTGLPPTALELEITENCLIEDPHEHAKVLDQIAKLGVRFALDDFGTGFSSL
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEHHHHCCCCCCC
EHIKLFPISVLKIDKSFIASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETLEQAEFCT
CCEEEEEEHHEEECHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARNCNILQGYLFSRPLEAIDFEAKFITPLLTKL
CCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MDLLLIDDDEVDRTAVIRALRQSKLAFNVIEANCAFDGLNLALERHFDGILLDYMLPDAN
CEEEEECCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCC
GLEVLIKLNAMTQDQTVVVMLSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAK
CCEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHCEEHHHHHHHHHHHHHHHHH
QRASMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNNYLAVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
DFKAINDTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCHHHHHHH
NRLLKAFEEVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQF
HHHHHHHHHHEECCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YSEALDREVRYRNHIESSLRVALRQNEFKVYYQAQVDSLTHQMVGMEALIRWQHLKDGVI
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
APDQFLPIAEEMGLMEEIGDWVLAEACRQAQIWLTQLKPIGRDFTIAVNLSASQIAQIDL
CCHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH
LSKIIQTLELTGLPPTALELEITENCLIEDPHEHAKVLDQIAKLGVRFALDDFGTGFSSL
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEHHHHCCCCCCC
EHIKLFPISVLKIDKSFIASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETLEQAEFCT
CCEEEEEEHHEEECHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARNCNILQGYLFSRPLEAIDFEAKFITPLLTKL
CCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]