| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597432
Identifier: 120597432
GI number: 120597432
Start: 660057
End: 660380
Strand: Direct
Name: 120597432
Synonym: Sputw3181_0601
Alternate gene names: NA
Gene position: 660057-660380 (Clockwise)
Preceding gene: 120597431
Following gene: 120597434
Centisome position: 14.02
GC content: 47.22
Gene sequence:
>324_bases ATGATCGCGGTAATTTTTGAAGTCATCCCGACAAAGGAAGGGAAGGAAGAGTATCTGCACGTGGCGGCTGAAATGCGCCA ATATTTAGAAGGCCGTAAGGGACTGATCTCGATCGAACGTTTTCAGAGTTTAACCGACGATGGCAAAGTGCTGAGTTTGT CGTTTTGGGAAGACCAAGCTTCGATCACCCAATGGCGTAATCAGATGGCTCACAGCATTGCCGAGCAAACGGGTATAGTG CCTTGTTTGTTTAACTCCTATCGCATTCGGGTGGCCGAAGTGGTGCAAGATTACAGTGAAACTGTACACATTGAAGCTGA GTAA
Upstream 100 bases:
>100_bases TTATCAGATTGACTAAAACTCTAAAAATCAGTGAGCTAAATAGCGATAGATAGGCTAGTCTTAGGGTCGACATTAAGGAC ATTCATTTCTGGAGAACATT
Downstream 100 bases:
>100_bases TCACTTATCTCGCTGAGGTAAAGAACAAAACCCATCTCTAGAGATGGGTTTTTTATGCGTGACACTTAAGTTTGAGATTA TTTTTCTTGTTGAGCTTTCA
Product: antibiotic biosynthesis monooxygenase
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold; Antibiotic Biosynthesis Monooxygenase Family; Monooxygenase; Antibiotic Biosynthesis Monooxygenase Domain Protein; Extracellular Polysaccharide Biosynthesis Protein
Number of amino acids: Translated: 107; Mature: 107
Protein sequence:
>107_residues MIAVIFEVIPTKEGKEEYLHVAAEMRQYLEGRKGLISIERFQSLTDDGKVLSLSFWEDQASITQWRNQMAHSIAEQTGIV PCLFNSYRIRVAEVVQDYSETVHIEAE
Sequences:
>Translated_107_residues MIAVIFEVIPTKEGKEEYLHVAAEMRQYLEGRKGLISIERFQSLTDDGKVLSLSFWEDQASITQWRNQMAHSIAEQTGIV PCLFNSYRIRVAEVVQDYSETVHIEAE >Mature_107_residues MIAVIFEVIPTKEGKEEYLHVAAEMRQYLEGRKGLISIERFQSLTDDGKVLSLSFWEDQASITQWRNQMAHSIAEQTGIV PCLFNSYRIRVAEVVQDYSETVHIEAE
Specific function: Unknown
COG id: COG2329
COG function: function code R; Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12320; Mature: 12320
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAVIFEVIPTKEGKEEYLHVAAEMRQYLEGRKGLISIERFQSLTDDGKVLSLSFWEDQA CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEECCCHH SITQWRNQMAHSIAEQTGIVPCLFNSYRIRVAEVVQDYSETVHIEAE HHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHEEEEECC >Mature Secondary Structure MIAVIFEVIPTKEGKEEYLHVAAEMRQYLEGRKGLISIERFQSLTDDGKVLSLSFWEDQA CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEECCCHH SITQWRNQMAHSIAEQTGIVPCLFNSYRIRVAEVVQDYSETVHIEAE HHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA