Click here to switch to the map view.

The map label for this gene is ylbK [H]

Identifier: 120597361

GI number: 120597361

Start: 575774

End: 577990

Strand: Direct

Name: ylbK [H]

Synonym: Sputw3181_0530

Alternate gene names: 120597361

Gene position: 575774-577990 (Clockwise)

Preceding gene: 120597360

Following gene: 120597362

Centisome position: 12.23

GC content: 41.99

Gene sequence:

>2217_bases
ATGATGCGCCGAATACTCGCTTCCCTCTTTTTATGCTTGTTATTTACCCCCTTAATTGCAGCTGAGCGACCTAAAATTGG
GGTAGTACTCAGTGGTGGTGGAGCGAAAGGTGCAGCCCATGTGGGCGTACTTAAAATATTAGAGGAACATAATATCCCTG
TGGATTACATTGCGGGCACGAGTATCGGCGCTTATGTCGCAGGAATGTATGCGCTTGGTTACAGCGCCAGTGAAGTTGAA
AGTATTATGATGGGCGTTGATTGGGATAGTGGCTATTCGGATACGATCCCCCGGAATATTTTGAGTTTTAGGGATAAACA
GTTACGCGATCGTTACAATATTCCCCTTAATATCGGTTACAACGAAGGTGAAGTGAGGGCGCCAAGTGGTGTGTTACGGG
GGCAGACAATGTCACAGCTACTCAGGCAATCAACTGATTTAGTACAACAATTTGGAAATTTTGATGATTTAGCGATTCCC
TACCGCGCGGTGGCAACTGATTTGGAAACGAGTCAACCCGTGATCATTAGCCATGGTAGCCTAGTGAATGCGATGCAAGC
CTCTGCGACTGTGCCTGGTGCGCTTCAACCTACACAATTTGAGGGTAAACTGCTCGTAGATGGGGGAATTGCGAATAATA
TGCCTGTGGATGTAGTTAAAGCCATGGGGGCCGACATTATTATTGCCGTCGATATTGGTTCACCTCTAGTCAAAAAAGAT
AAGTTATACAGCACCATAGCGGTACTCGATCAGTTATCAAACTTTCTGACCAACGCTAGCACCGAGAAGCAAAAACAGCT
ATTAACAGATAAAGATGTGCTAATTCGTCCCGCTATTGATGCCTTAAGTACAACCGATTTTACTATCATGCCTCTAGCAT
TAACCCTCGGCAAAGAAGCGGCAAATAACCATCTCGATAAACTGAGCAGCTTGAGTTTGAGCCCAGATGAATATGCTGCT
TATGTTGATGCGAAAAGAGTTAAAGGCAAAACCTTGATGACGGATGTGTCGCATCCTATTCACGAAATTGTATTTGATAA
CCAATCGAAGGTCAGCTTAAACCTCCTAAAAGAAACGTTAAATCTGCAGAAGGGGCAAACCGTTTCTAAAGATGAATTAA
ATGAAGCATTAAAACGCATTTATTCTCTGAATAAATTTGAACGTGTTGATGCTGAGTTTGTTGAAGGAGAAGAGGGGCGC
ATACTCACAGTGACGACTAAAGCGAAGTCTTGGGGACCGAATTATTTTCAGTTAGGCTTTAATTGGGAGGATGATTTTAA
CGCCGATTCAGCCATCAGTTTTGATATGGCATACACTATGACGGATTTAACGTTCAATGGTGGTGAGTGGCGCAATGAAG
TCAAACTGGGATTTGAAAAATTATTTGCCACTGAATTTTATCAACCACTCGATAGGGATCAGGAGTTCTTTAGTCGGGCC
AGATATCAATACGATATCCGTAATTGGGATCTTTTTGATAATAATAGCCGCGTCTTAATTTTCGATAAGAAAACCCATAC
TGTTGAGTTAGGTATTGGTTATAACTATACCCTTCAGGGAAGTATTGAATTGGGTGTTGTTGGTGAAAAAGGCACGATAG
AAAATGATGCTTGGTTAATTGATGATTTAGACTTCAGCTCCTATGGTGCCTACTTGAGGTTTGGCTACGATAGCTTAGAT
AGCATTAGTTTCCCAACATCAGGAAATCGAATCACGCTGAATGTCTATGTTCGTAATGAAGATTTTGATGATGTTATCGA
CAACAATGAAAATAATTATAGTGTACAGATAGAAGCGGATTGGAAAGGTGCTCTCAGTGTAGGCAATCATGCTTTTGTGG
GTAAGACTTCTATTGCGACCAACAATAATGACGGTATCAATACACTTCATCTATCTGATCTGGGCGGATTCTTAAATCTT
TCTGGTTACCATAAAGACTCGCTTACTGGGGCACATAAGTTATTTGGTGCTTTTATTTACCAATACGATCTTGGGCGTGA
TGCCCTCGGTATGACGGATTATCCTCTCTATCTTGGTTGGAGTTTAGAGGCTGGAAATGTTTGGTTTGAGCGCAGTGAGG
TTTCATTGACGGATCTGATTTATGCATCAAGTCTATATGTTGGGACTGATACCGCATTGGGGCCAGCAGCATTAGGATTT
GGGATCACCGATTTTGGAGATCGATCTTTCTATCTGTTTGTGGGTAAAAACTTTTAA

Upstream 100 bases:

>100_bases
CGATTAATGAACTCATCGGTTCAGATAAAATATGACTGACGGTTAAATGCATAAGTTTGTTAATATAACGCGAATTTTAT
CCTATAAAAAGTGATCCTTA

Downstream 100 bases:

>100_bases
AAGCGATTTAGCTGTGCAATAAAATCAGGGCATAACATGAGTTATGCCCTGATTTTTTGAGAAATAATCGAAACAAAATC
GAAACAAAGTGGGTGAAAGT

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 738; Mature: 738

Protein sequence:

>738_residues
MMRRILASLFLCLLFTPLIAAERPKIGVVLSGGGAKGAAHVGVLKILEEHNIPVDYIAGTSIGAYVAGMYALGYSASEVE
SIMMGVDWDSGYSDTIPRNILSFRDKQLRDRYNIPLNIGYNEGEVRAPSGVLRGQTMSQLLRQSTDLVQQFGNFDDLAIP
YRAVATDLETSQPVIISHGSLVNAMQASATVPGALQPTQFEGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
KLYSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEAANNHLDKLSSLSLSPDEYAA
YVDAKRVKGKTLMTDVSHPIHEIVFDNQSKVSLNLLKETLNLQKGQTVSKDELNEALKRIYSLNKFERVDAEFVEGEEGR
ILTVTTKAKSWGPNYFQLGFNWEDDFNADSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQEFFSRA
RYQYDIRNWDLFDNNSRVLIFDKKTHTVELGIGYNYTLQGSIELGVVGEKGTIENDAWLIDDLDFSSYGAYLRFGYDSLD
SISFPTSGNRITLNVYVRNEDFDDVIDNNENNYSVQIEADWKGALSVGNHAFVGKTSIATNNNDGINTLHLSDLGGFLNL
SGYHKDSLTGAHKLFGAFIYQYDLGRDALGMTDYPLYLGWSLEAGNVWFERSEVSLTDLIYASSLYVGTDTALGPAALGF
GITDFGDRSFYLFVGKNF

Sequences:

>Translated_738_residues
MMRRILASLFLCLLFTPLIAAERPKIGVVLSGGGAKGAAHVGVLKILEEHNIPVDYIAGTSIGAYVAGMYALGYSASEVE
SIMMGVDWDSGYSDTIPRNILSFRDKQLRDRYNIPLNIGYNEGEVRAPSGVLRGQTMSQLLRQSTDLVQQFGNFDDLAIP
YRAVATDLETSQPVIISHGSLVNAMQASATVPGALQPTQFEGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
KLYSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEAANNHLDKLSSLSLSPDEYAA
YVDAKRVKGKTLMTDVSHPIHEIVFDNQSKVSLNLLKETLNLQKGQTVSKDELNEALKRIYSLNKFERVDAEFVEGEEGR
ILTVTTKAKSWGPNYFQLGFNWEDDFNADSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQEFFSRA
RYQYDIRNWDLFDNNSRVLIFDKKTHTVELGIGYNYTLQGSIELGVVGEKGTIENDAWLIDDLDFSSYGAYLRFGYDSLD
SISFPTSGNRITLNVYVRNEDFDDVIDNNENNYSVQIEADWKGALSVGNHAFVGKTSIATNNNDGINTLHLSDLGGFLNL
SGYHKDSLTGAHKLFGAFIYQYDLGRDALGMTDYPLYLGWSLEAGNVWFERSEVSLTDLIYASSLYVGTDTALGPAALGF
GITDFGDRSFYLFVGKNF
>Mature_738_residues
MMRRILASLFLCLLFTPLIAAERPKIGVVLSGGGAKGAAHVGVLKILEEHNIPVDYIAGTSIGAYVAGMYALGYSASEVE
SIMMGVDWDSGYSDTIPRNILSFRDKQLRDRYNIPLNIGYNEGEVRAPSGVLRGQTMSQLLRQSTDLVQQFGNFDDLAIP
YRAVATDLETSQPVIISHGSLVNAMQASATVPGALQPTQFEGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
KLYSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEAANNHLDKLSSLSLSPDEYAA
YVDAKRVKGKTLMTDVSHPIHEIVFDNQSKVSLNLLKETLNLQKGQTVSKDELNEALKRIYSLNKFERVDAEFVEGEEGR
ILTVTTKAKSWGPNYFQLGFNWEDDFNADSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQEFFSRA
RYQYDIRNWDLFDNNSRVLIFDKKTHTVELGIGYNYTLQGSIELGVVGEKGTIENDAWLIDDLDFSSYGAYLRFGYDSLD
SISFPTSGNRITLNVYVRNEDFDDVIDNNENNYSVQIEADWKGALSVGNHAFVGKTSIATNNNDGINTLHLSDLGGFLNL
SGYHKDSLTGAHKLFGAFIYQYDLGRDALGMTDYPLYLGWSLEAGNVWFERSEVSLTDLIYASSLYVGTDTALGPAALGF
GITDFGDRSFYLFVGKNF

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=290, Percent_Identity=29.3103448275862, Blast_Score=109, Evalue=8e-24,
Organism=Homo sapiens, GI116256487, Length=290, Percent_Identity=29.3103448275862, Blast_Score=109, Evalue=8e-24,
Organism=Homo sapiens, GI260656039, Length=290, Percent_Identity=29.3103448275862, Blast_Score=109, Evalue=8e-24,
Organism=Homo sapiens, GI148727335, Length=290, Percent_Identity=29.6551724137931, Blast_Score=109, Evalue=8e-24,
Organism=Homo sapiens, GI260656043, Length=290, Percent_Identity=29.3103448275862, Blast_Score=109, Evalue=9e-24,
Organism=Homo sapiens, GI148727290, Length=290, Percent_Identity=29.6551724137931, Blast_Score=109, Evalue=9e-24,
Organism=Homo sapiens, GI260656037, Length=290, Percent_Identity=29.3103448275862, Blast_Score=109, Evalue=1e-23,
Organism=Escherichia coli, GI226510936, Length=325, Percent_Identity=27.0769230769231, Blast_Score=102, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI71997289, Length=288, Percent_Identity=28.8194444444444, Blast_Score=88, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71997299, Length=288, Percent_Identity=28.8194444444444, Blast_Score=88, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI193204778, Length=210, Percent_Identity=30, Blast_Score=74, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6323581, Length=289, Percent_Identity=29.4117647058824, Blast_Score=95, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 81657; Mature: 81657

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRILASLFLCLLFTPLIAAERPKIGVVLSGGGAKGAAHVGVLKILEEHNIPVDYIAGT
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECC
SIGAYVAGMYALGYSASEVESIMMGVDWDSGYSDTIPRNILSFRDKQLRDRYNIPLNIGY
CHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
NEGEVRAPSGVLRGQTMSQLLRQSTDLVQQFGNFDDLAIPYRAVATDLETSQPVIISHGS
CCCCEECCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEECCC
LVNAMQASATVPGALQPTQFEGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHH
KLYSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCHHHHCCCCEEEEEHHHHHCHHH
ANNHLDKLSSLSLSPDEYAAYVDAKRVKGKTLMTDVSHPIHEIVFDNQSKVSLNLLKETL
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEHHHCCHHHHHHCCCCCCCHHHHHHHHH
NLQKGQTVSKDELNEALKRIYSLNKFERVDAEFVEGEEGRILTVTTKAKSWGPNYFQLGF
CCCCCCCCCHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEEEEEC
NWEDDFNADSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQEFFSRA
CCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC
RYQYDIRNWDLFDNNSRVLIFDKKTHTVELGIGYNYTLQGSIELGVVGEKGTIENDAWLI
CEEEECCCCEEECCCCEEEEEECCCEEEEEECCEEEEEECEEEEEEECCCCCCCCCCEEE
DDLDFSSYGAYLRFGYDSLDSISFPTSGNRITLNVYVRNEDFDDVIDNNENNYSVQIEAD
ECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHCCCCCCEEEEEEEC
WKGALSVGNHAFVGKTSIATNNNDGINTLHLSDLGGFLNLSGYHKDSLTGAHKLFGAFIY
CCCEEECCCEEEECCEEEECCCCCCCEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHE
QYDLGRDALGMTDYPLYLGWSLEAGNVWFERSEVSLTDLIYASSLYVGTDTALGPAALGF
EEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCHHHHHEECEEEECCCCCCCHHHHCC
GITDFGDRSFYLFVGKNF
CCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MMRRILASLFLCLLFTPLIAAERPKIGVVLSGGGAKGAAHVGVLKILEEHNIPVDYIAGT
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECC
SIGAYVAGMYALGYSASEVESIMMGVDWDSGYSDTIPRNILSFRDKQLRDRYNIPLNIGY
CHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
NEGEVRAPSGVLRGQTMSQLLRQSTDLVQQFGNFDDLAIPYRAVATDLETSQPVIISHGS
CCCCEECCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEECCC
LVNAMQASATVPGALQPTQFEGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHH
KLYSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCHHHHCCCCEEEEEHHHHHCHHH
ANNHLDKLSSLSLSPDEYAAYVDAKRVKGKTLMTDVSHPIHEIVFDNQSKVSLNLLKETL
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEHHHCCHHHHHHCCCCCCCHHHHHHHHH
NLQKGQTVSKDELNEALKRIYSLNKFERVDAEFVEGEEGRILTVTTKAKSWGPNYFQLGF
CCCCCCCCCHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEEEEEC
NWEDDFNADSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQEFFSRA
CCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC
RYQYDIRNWDLFDNNSRVLIFDKKTHTVELGIGYNYTLQGSIELGVVGEKGTIENDAWLI
CEEEECCCCEEECCCCEEEEEECCCEEEEEECCEEEEEECEEEEEEECCCCCCCCCCEEE
DDLDFSSYGAYLRFGYDSLDSISFPTSGNRITLNVYVRNEDFDDVIDNNENNYSVQIEAD
ECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHCCCCCCEEEEEEEC
WKGALSVGNHAFVGKTSIATNNNDGINTLHLSDLGGFLNLSGYHKDSLTGAHKLFGAFIY
CCCEEECCCEEEECCEEEECCCCCCCEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHE
QYDLGRDALGMTDYPLYLGWSLEAGNVWFERSEVSLTDLIYASSLYVGTDTALGPAALGF
EEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCHHHHHEECEEEECCCCCCCHHHHCC
GITDFGDRSFYLFVGKNF
CCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]