| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597324
Identifier: 120597324
GI number: 120597324
Start: 532677
End: 533111
Strand: Direct
Name: 120597324
Synonym: Sputw3181_0493
Alternate gene names: NA
Gene position: 532677-533111 (Clockwise)
Preceding gene: 120597323
Following gene: 120597325
Centisome position: 11.31
GC content: 38.39
Gene sequence:
>435_bases ATGAATATGTATGAAGAGTTTGTACATTCTGAGGATGAGGTTGAACCTACGCTTGAGTATCAAATTATTGAGTTTGATAA TCGGCGAACTCATCAGAGACTCAGCCTACGACATGATAAAAGAGTGCCATTAGCGTTTGCCTGTGATGGCTTAACGGTTA ACTTATCAACGACTCGTTGGTTTATCCTCACGCCACTCGGTACCGCGAACATAAAAGACATTAGTATTGGCGGTGTTGGC ATTTTATGCAGTGAACCATTATCCATAGGGATGAAATTCTATATTGAACTTGATCAATATAGAGTCCTATGTGAAGTCAC TCGAGAACACTCAATTAAAGGTCATTTAAAATTTTTGGGTGCTCGTTGGATTAATGGTAACGATACCGAGGTTCAAAATT TAATCGACGCAATTAAATTACGAGCCAAAATATAG
Upstream 100 bases:
>100_bases CCTAACGAGACTATCCAGAACGGTATTAGCATTAACGATATAAAACGACAGACTATCGCACATTAGTGTTTGCACTTGTA CTCATTTGTTAGGTATGACT
Downstream 100 bases:
>100_bases GGCATGCAATGGCTGCATCTTTTAATCGTAATGGCTCAGATAAGCTACAAAAAGTATTCCTTTATCTTATCCTGCTAAAC TGGCTATTACTCATTGTTAT
Product: type IV pilus assembly PilZ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MNMYEEFVHSEDEVEPTLEYQIIEFDNRRTHQRLSLRHDKRVPLAFACDGLTVNLSTTRWFILTPLGTANIKDISIGGVG ILCSEPLSIGMKFYIELDQYRVLCEVTREHSIKGHLKFLGARWINGNDTEVQNLIDAIKLRAKI
Sequences:
>Translated_144_residues MNMYEEFVHSEDEVEPTLEYQIIEFDNRRTHQRLSLRHDKRVPLAFACDGLTVNLSTTRWFILTPLGTANIKDISIGGVG ILCSEPLSIGMKFYIELDQYRVLCEVTREHSIKGHLKFLGARWINGNDTEVQNLIDAIKLRAKI >Mature_144_residues MNMYEEFVHSEDEVEPTLEYQIIEFDNRRTHQRLSLRHDKRVPLAFACDGLTVNLSTTRWFILTPLGTANIKDISIGGVG ILCSEPLSIGMKFYIELDQYRVLCEVTREHSIKGHLKFLGARWINGNDTEVQNLIDAIKLRAKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16591; Mature: 16591
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMYEEFVHSEDEVEPTLEYQIIEFDNRRTHQRLSLRHDKRVPLAFACDGLTVNLSTTRW CCHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCEEEEECCEEEEECCCEE FILTPLGTANIKDISIGGVGILCSEPLSIGMKFYIELDQYRVLCEVTREHSIKGHLKFLG EEEECCCCCCCEEEEECCEEEEECCCCCCCEEEEEEEHHHHEEEHHHHCCCCCEEEEEEE ARWINGNDTEVQNLIDAIKLRAKI EEEECCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MNMYEEFVHSEDEVEPTLEYQIIEFDNRRTHQRLSLRHDKRVPLAFACDGLTVNLSTTRW CCHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCEEEEECCEEEEECCCEE FILTPLGTANIKDISIGGVGILCSEPLSIGMKFYIELDQYRVLCEVTREHSIKGHLKFLG EEEECCCCCCCEEEEECCEEEEECCCCCCCEEEEEEEHHHHEEEHHHHCCCCCEEEEEEE ARWINGNDTEVQNLIDAIKLRAKI EEEECCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA