Click here to switch to the map view.

The map label for this gene is radC

Identifier: 120597169

GI number: 120597169

Start: 364602

End: 365279

Strand: Direct

Name: radC

Synonym: Sputw3181_0338

Alternate gene names: 120597169

Gene position: 364602-365279 (Clockwise)

Preceding gene: 120597164

Following gene: 120597170

Centisome position: 7.74

GC content: 45.13

Gene sequence:

>678_bases
ATGGGCATCAAAGATTGGCCAGAGGGAGAGGGGCCTAGAGATAAACTACTACAAAAAGGAGCTGCCTATTTATCGGATGC
AGAGTTACTGGCCGTATTGCTGCGTAATGGTTTAGCGGGTCTTAACGCTGTCGATCTAGCTAGATCGTTGATCAGTGAGT
TTGGAGGATTAAGAAATCTACTTTGCGCCCCTAAAAATCAGGTGTGTCGACTTCCTGGCGTAGGGCCTGTAAAATACGCT
CAGCTTCAAGCTGCAGCTGAATTAGCGCGGCGTGTCGCACAAGAAAATCTACAAAGAGGTCAGGTTTTGACAAATCCCGA
TTTAACTCGGGACTATTTAATGAGACAATTAACTGACCGCTCCTATGAAGTGTTCGCAATTTTGCTGCTAGATAGCCAGC
ATAGAGTGATTCAGTTTGTCGAATTATTCCGCGGCACAATAGACTCAGCCTCAGTGTATCCACGTGAAGTGGTGAGCTTA
GTGCTTGAAAAAAAGGCAGCTGCCGTTATAGTGTGTCACAATCATCCGTCTGGTATTGCCGAGCCCAGTCAGGCTGACAG
ACGAATAACTGAGCGATTAAAAAATGCGTTAGCAACCATAGATGTATCCTTATTGGATCATATGGTTGTAGGTGATCGAG
AGATAGTTTCTTTTGCGGAACGAGGCTGGATTAATTAA

Upstream 100 bases:

>100_bases
AACGATACCACAACGCGGTGAATTTTAGTGACTATCCCAGTTCAAAAAATCTCGTCCATACTCAGTAAAGTGAAAATATG
TGAGGTAACAAGGAGGTCAC

Downstream 100 bases:

>100_bases
TCTAACACTTGATCTTCACTCTGTGATCGTGTATAAAATGCGCCCTCTTTGTGCCTCGGGCGACGGCCATACGAGGCACA
TTAATGCTCGAGCGTTAAAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MGIKDWPEGEGPRDKLLQKGAAYLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPKNQVCRLPGVGPVKYA
QLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLTDRSYEVFAILLLDSQHRVIQFVELFRGTIDSASVYPREVVSL
VLEKKAAAVIVCHNHPSGIAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN

Sequences:

>Translated_225_residues
MGIKDWPEGEGPRDKLLQKGAAYLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPKNQVCRLPGVGPVKYA
QLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLTDRSYEVFAILLLDSQHRVIQFVELFRGTIDSASVYPREVVSL
VLEKKAAAVIVCHNHPSGIAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN
>Mature_224_residues
GIKDWPEGEGPRDKLLQKGAAYLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPKNQVCRLPGVGPVKYAQ
LQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLTDRSYEVFAILLLDSQHRVIQFVELFRGTIDSASVYPREVVSLV
LEKKAAAVIVCHNHPSGIAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=45.0704225352113, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1788997, Length=127, Percent_Identity=44.8818897637795, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI2367100, Length=125, Percent_Identity=44, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=42.4, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y338_SHESW (A1REU4)

Other databases:

- EMBL:   CP000503
- RefSeq:   YP_961743.1
- ProteinModelPortal:   A1REU4
- SMR:   A1REU4
- STRING:   A1REU4
- GeneID:   4658971
- GenomeReviews:   CP000503_GR
- KEGG:   shw:Sputw3181_0338
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   DKPREKL
- ProtClustDB:   PRK00024
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 24863; Mature: 24732

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKDWPEGEGPRDKLLQKGAAYLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LCAPKNQVCRLPGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLTDR
HCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
SYEVFAILLLDSQHRVIQFVELFRGTIDSASVYPREVVSLVLEKKAAAVIVCHNHPSGIA
CCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
EPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GIKDWPEGEGPRDKLLQKGAAYLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LCAPKNQVCRLPGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLTDR
HCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
SYEVFAILLLDSQHRVIQFVELFRGTIDSASVYPREVVSLVLEKKAAAVIVCHNHPSGIA
CCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
EPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA